Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0805 ATGGGAGGCTTATTGCACATGTTTGAGTTCAATCAGGGTGGGATGCCCAAGAAAGTTCATGCCCATAAGAACAATAATGGTGACCTGGAAACTTCTGGAAAGGGCATGGAGCTGCCAGTAGAAACATCTCACGTCCACTGTCCAGAAGGAGAATTGCCATACTCTTGTCAAGTGGATGATGGCTGGTCAAAGAATATTAGTTACTCAAATGTGGCTTCAGTGAAAAAGCTGAACAATGAGGAGTTATCCAAACAATCAGGCACCAGAAATAAAGCACCAAGCCTTGTGGCAAGGTTGATGGGGATAGACACAATGCCATTACCATTAGACACTAAATCTGTTGTTCCATCAAATGGAAGCAAACATGAAAATATGGAGAGGAAGTTTTCAAAGAAGGGATTGAATGGAAGGTGTTTGGTTGGTAGGGGTTCCTCCAACTTTAATTCTTCTAGCCAGATggattttgattcattttatcaaGACATTGATGGTGATGATAGATGGGGACAGAATTTTGGAAAACCAAGGCCAAGGGAACATCCTCAGGAAGAGGAACTCCAAAAATTCAAGAAAGAATTTGAAGCATATCAAGCAGCAAGGTTTAAGGAGTGGTCAAAGGTTGTTGAAACCGGAAGTGGTTCTAGGAGAATGCTTTCTCAAGAGAACCTGAGCAAGGAAAAGATGTTTCTTATTGCCAGTTCAAAGACAGATGGCCACTCATTTAAGACAAATCTACCTAATGTTGATATGATGGAGCCAATCTCaactaagaaaaaagaatcCTTTCCTTCAAGAAGTAAAACGCTAAGTAGAGACTTTGAGGAGTCTTTAATGATGAAATCAAGAAGCAGATTAGATATATGTGCTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTTCTGATAGGATTTGCAATTGCAACCATGAAGAGAATTGCATCGGTTTATCAAGCACTTTACAAGGGAGAAAAGGTATAGAAGATTTTCTTGAGGAAGTGAGAGAGCGGTTGAAATGTGAACTGCAAGGGAAAATAGCCAAAAAGGGTTCTCTGATTAGAGCCAGTGGAATTGAGACACCTTACAATGAAAAACCATTTGATGCTAAAGAGGTCAGAGAAAGTGTGATTAGAGATGCTGAACCAAATTTACTCCGCTCAGAATCAACAAGGTCATACAAAAgtgaaatacaattcaatggATCAAGTTCCCCAGAATTTTTCAACATAGATGCCAGAAGATTCTTGTCAGAGGGGCTAAGCAATATTGTAAAAAGTGAACTGCATTTGGACATTCCTGAAGTGGCTTGTTATTTAGAAAATGACAGGGTTAGACTAAAGCAAGATTGTGCAAATGACAAGAGCCAGTGGGggattttgaaagagaaaaaagaattacaaaCAGCTTCCTATAGACAtaaattagatgacaatgtattGCTCCACAAGGAGTTGTCCCCTTGGAACCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAACATCATTTGGGAGGCTTCTTCTAGAGGACCGCCACATTTTAACCGGTGCCCTTATTCAGAGGAAGCTTGAAGCTGTTGAAACAGTGCCTGTGgatgttaaaaaacaaaagaaagatagatttaatattagagaaaaagtttccaattttaaatatactctTGGTCTAAGAGGGAAGCTGTTTGGAAAAAGGGTTCAATCAATAGTAGAATCACATGGCAATGAATGTGGTCCAATTTTGACAGATATCAGGAGTGGACCAACTGTTCTCATGAAATATGGGGAGAGACATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCTGTGCTCACGAAGAACATTGGAGACAGACTGAATATTCAAGTCCAATATCAACTCCAATATCAACTCCAGATGTATCTTCATTAGAAGATATTGTTATTCCCAAGGTTTTTAGAGATATTAGCTCTGGTTTGAATGAGCTAAAGAGGCAACTCAGTCAACTTGATTCGGACAGTTCTGACAACTTCACCACAAAGCAGGAGCCTATTGAGTCTGAATTAGTTCAATTGGATGATCCAGCAGAATCTTATGTAAGAGATCTGCTTGTTGCATCTGGTTTGTACTTTGGTTCGTGGGATAAATCTCTATTGAGAGGGGACACATTTGCAAAGCCTATTGGCAactcagtttttgaagaagtGGAAGAATCTCATAAGAAATTGGTCAAGGAGAATGAAAGATCCACAAAGGATCAGAATAAGAGTAAGTTAGAGCACAAGGTTTTGCTTGATTTGTTAAATGAGGCACTTTCCGTTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAACTAAGCAATTCCTCCATGCAGCCTCCACCATGTGGAAAGGAACTACTGAAGTTAGTATGGGACATTGTCCGTGTTCATTTATATCCTACATCTAACACATCCCCTTATTCAGTTGATAATTTGGTGGCACAAGATCTAGGATCTATTTCCTGCTCTGGACTAATAAATGACCAGATTGATATGTTGGAAAGAGAGATGGCATGTCTAATCACTGGTGATTTGGTTGAAGAACTCACAAAGGATATGCTCTTTTAG 2604 0.3794 MGGLLHMFEFNQGGMPKKVHAHKNNNGDLETSGKGMELPVETSHVHCPEGELPYSCQVDDGWSKNISYSNVASVKKLNNEELSKQSGTRNKAPSLVARLMGIDTMPLPLDTKSVVPSNGSKHENMERKFSKKGLNGRCLVGRGSSNFNSSSQMDFDSFYQDIDGDDRWGQNFGKPRPREHPQEEELQKFKKEFEAYQAARFKEWSKVVETGSGSRRMLSQENLSKEKMFLIASSKTDGHSFKTNLPNVDMMEPISTKKKESFPSRSKTLSRDFEESLMMKSRSRLDICASPTQIVILKPGSDRICNCNHEENCIGLSSTLQGRKGIEDFLEEVRERLKCELQGKIAKKGSLIRASGIETPYNEKPFDAKEVRESVIRDAEPNLLRSESTRSYKSEIQFNGSSSPEFFNIDARRFLSEGLSNIVKSELHLDIPEVACYLENDRVRLKQDCANDKSQWGILKEKKELQTASYRHKLDDNVLLHKELSPWNLERSLSAPASGTSFGRLLLEDRHILTGALIQRKLEAVETVPVDVKKQKKDRFNIREKVSNFKYTLGLRGKLFGKRVQSIVESHGNECGPILTDIRSGPTVLMKYGERHENSTEVPPSPASVCSCAHEEHWRQTEYSSPISTPISTPDVSSLEDIVIPKVFRDISSGLNELKRQLSQLDSDSSDNFTTKQEPIESELVQLDDPAESYVRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVFEEVEESHKKLVKENERSTKDQNKSKLEHKVLLDLLNEALSVVLGPPLTLSRFRRKLSNSSMQPPPCGKELLKLVWDIVRVHLYPTSNTSPYSVDNLVAQDLGSISCSGLINDQIDMLEREMACLITGDLVEELTKDMLF 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0805 867 Pfam Domain of unknown function (DUF4378) 693 860 IPR025486 -
Ssu5g0805 867 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 866 - -
Ssu5g0805 867 Coils Coil 728 748 - -
Ssu5g0805 867 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
Ssu5g0805 867 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0805 Ssu-Chr5 20710210 20714083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0805 74 865 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 38.998 6.97e-137 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0805 - - gmx:100810825 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0805 5 20710210 20714083 Ssu5g0805 5 20710210 20714083 ECH
Ssu2g2157 2 77513928 77517252 Ssu5g0805 5 20710210 20714083 PCT