Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0791 ATGGGTCTCCACTTCTCCACTGGCTCTGCACCTCACTCCTCTTCCCTCAACCGCCCTCAATATTCAGgTTCAGCAGACGGCGAAGGGTCTCTTCCTGATGGCCGGATTCTGAAATGGCCAAACTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAAGGAATTTCAAGTATGACGCAGTTCTCGTTGGTGAAGGTGGTTTTGAGTCTTCTGGCAAAGTTTTCAAGGGGTGGTTGGATGGGAAGACCCTCACCCCTACCAAAGCAGGTTTTGGAATGGTCGTTTCCATCAAAATGTTTAACCCTGAAACTGAAAGATTGGGGTTTCAGGAGTGGCAGTCAGAAATAAACATTTTAGGAAGGCTTTCTCACCCCAACCTGGTCAAGCTATTGGGTTACTGTTGGGACAATGATAAGCTTTTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTAGACAATCATCTATTCAGAGGATATCATAGCTTAGACACACTTTCTTGGAACACTCGGTTGAAAATAGCTATTGGTGCAGCTCGGGCATTAGCTTTGTTGCACACCTCCGAAAAGCCAGTCATATACAGAGATTTCAAGACCTCACATATACTACTCGATGGGAATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTGTATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGTGTCATGGGAACGCGTGGTTATGTGGCTCCAGAATACGTAGCAACAGGCCGCTTGTATGTGAAGAGTGATGTGTACGGGTTTGGTGTAGTGCTACTTGAAATACTGACAGGCATGCGGGCAATTGACAATAATCGGCCAACATGGCAGCAGAACCTGGTTGAATGGAGTAAGCCTTATCTTTCCTCCAAAAAAGAGTTGAAAACCATTATGGATGCTAAGATAGAGGGTCAATATTCACTCAGGGAAGCATTTCAAGCAGCACAACTTACTCTAAAATGCCTAGAATCTCACCCTAAAAAACGTCCTTCCATGAAAGAGGTAGTTGAGGCACTGGAATCCATTGAAGCTATGCATGAAAAATCCAAGGAATCCGAGGCTTTTTAa 1083 0.4469 MGLHFSTGSAPHSSSLNRPQYSGSADGEGSLPDGRILKWPNLKVFSFEELKSATRNFKYDAVLVGEGGFESSGKVFKGWLDGKTLTPTKAGFGMVVSIKMFNPETERLGFQEWQSEINILGRLSHPNLVKLLGYCWDNDKLFLVYEFMPKGSLDNHLFRGYHSLDTLSWNTRLKIAIGAARALALLHTSEKPVIYRDFKTSHILLDGNYNAKISDFGLAVLGPSGGQSHVTTSVMGTRGYVAPEYVATGRLYVKSDVYGFGVVLLEILTGMRAIDNNRPTWQQNLVEWSKPYLSSKKELKTIMDAKIEGQYSLREAFQAAQLTLKCLESHPKKRPSMKEVVEALESIEAMHEKSKESEAF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0791 360 Pfam Protein kinase domain 92 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0791 360 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Ssu5g0791 360 ProSiteProfiles Protein kinase domain profile. 58 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0791 360 PANTHER OS01G0588500 PROTEIN-RELATED 26 356 - -
Ssu5g0791 360 SUPERFAMILY Protein kinase-like (PK-like) 39 345 IPR011009 -
Ssu5g0791 360 Gene3D Phosphorylase Kinase; domain 1 35 147 - -
Ssu5g0791 360 MobiDBLite consensus disorder prediction 1 24 - -
Ssu5g0791 360 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 26 356 - -
Ssu5g0791 360 CDD STKc_IRAK 64 347 - -
Ssu5g0791 360 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0791 Ssu-Chr5 20362544 20365122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0791 43 344 Glycoside Hydrolase AT3G07070 46.732 1.25e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g0791 Pkinase 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0791 - - gmx:100794193 493.041