Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0784 ATGGCTCATCTCAGCCACAAGACCTTGGTTTCTCTTCCTAGAACGATGTCTGAACATGAAGCTGAGGAAGGCCAAGCCAATAGTCTTGGTTCCCTTCCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAAATTCCAATCCTGTCTTGGATTCTTCACTTCACAATTCGGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTAAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGTCTCCAAAAGCCTACTCTTTTGGCAACTCATCTGATGGATATATTTTGTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCGATTCGCTTGGATATCCAgGCATTTGAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGTTACCAGTCTTTGCAAGTACATCGAGTAGCCCACGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTTAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCCGCTGCGAAAATTGGAGATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCATTGATGCAAGGTGTAACTTTGGGTGGCACAGGAAAGGAAACAGGTGATCGCCATCCCAAAGTTGCTGAAGGTGTGCTAATTGGAGCTAGTGCAACTATACTTGGGAATATAAGAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTCCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCTTTAACCATACATCAAGATGAGAATAAGCATCTCTCGGAGGAGTTTTTTTACAGCAAAGATGAAACCACAGAAAATGACTacataatgtga 1026 0.4279 MAHLSHKTLVSLPRTMSEHEAEEGQANSLGSLPSWPHRLENVFPVYAMGNSNPVLDSSLHNSDCLDPIWDAVREEAKLEAEKEPILSSFFYATILSHDCLEQALAFALANRLQKPTLLATHLMDIFCNVMKHDKGIQQSIRLDIQAFEDRDPACLSYCSALLYMKGYQSLQVHRVAHALWGQGRKVLALALQSRVSEVFGVDIHPAAKIGDGILVDHGTGVVIGETAIVGNRVSLMQGVTLGGTGKETGDRHPKVAEGVLIGASATILGNIRIGECVMIAAGSLVLQEVPPHSIVAGVPAKVIGRVHEHYPSLTIHQDENKHLSEEFFYSKDETTENDYIM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0784 341 Pfam Serine acetyltransferase, N-terminal 68 171 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu5g0784 341 CDD LbH_SAT 199 299 IPR045304 -
Ssu5g0784 341 SMART SATase_N_2_a 68 172 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu5g0784 341 TIGRFAM cysE: serine O-acetyltransferase 140 301 IPR005881 GO:0005737|GO:0006535|GO:0009001
Ssu5g0784 341 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 261 289 IPR018357 GO:0016740
Ssu5g0784 341 PANTHER SERINE ACETYLTRANSFERASE 9 331 - -
Ssu5g0784 341 Gene3D Hexapeptide repeat proteins 202 331 - -
Ssu5g0784 341 Gene3D serine acetyltransferase, domain 1 53 201 IPR042122 -
Ssu5g0784 341 PANTHER SERINE ACETYLTRANSFERASE 2-RELATED 9 331 - -
Ssu5g0784 341 SUPERFAMILY Trimeric LpxA-like enzymes 67 309 IPR011004 -
Ssu5g0784 341 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0784 Ssu-Chr5 20041690 20045284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0784 39 328 Miscellaneous Gene Families AT2G17640 68.966 1.41e-135 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0784 K00640 - gmx:100778586 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0784 5 20041690 20045284 Ssu5g0784 5 20041690 20045284 ECH
Ssu2g2181 2 77917620 77921228 Ssu5g0784 5 20041690 20045284 PCT
Ssu5g0784 5 20041690 20045284 Ssu2g1984 2 72679410 72681690 PCT