Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0769 ATGACCGGTCTGAGTTTAAAACACTGCCGTAGGAATCCCCGGAGGGGTCAGGGGACTTTGGTCGAACAACTGCCCTGCAAGCCACAAAAGAGCCTCACGGTGGCGGGATTGAGTGCCACAGCATGCAATCGCGGTATCCGAAACCTCTCAGCCTGGTTGAGCGAAAATGATGCATCGGCACAGATCTCTCATTTCCACACTAACCACTTCTATTCCATTcatcaacaccaccaccaccaccaccaccaccacccaaACCCATTTCCCCTCTCTACTGCACCAACGCAAACCTTCCCTTTTCTTCACTTCCGAATCCCAGTCAACCGAAGACCCCAACCTCACCCTCTCTTACCTCATCAACTCCTGCGGCCTCTCCCCCGCGTGGGCCCTCAAGCTCTCCAAACGGGTCCACCTCAGAAACCCCGACCAAGCCGACGCCGTCCTCGACCTCCTCCGAAGCTTCGGGTTCTCCGAGACCCAGCTTTCCCTCCTCGTGAAGCGCTTCCCCAGGTGCTCTCCGCCAAGCCCGACAAGACCCTCTTGCCGAAGCTCCAGTTTTTCCTCTCCGTCGGCGTCTCCACCGCCGACCTCCCCAAGATCCTCATCGGAAACGCCGTGCTCCTCGAGGGCAGCCTCGCCAACTGCATCGCGCGCCGCTGCGACATCCTCAAGAGCGTCCTCGGAAGCCAGGACGAGGTCGTGGCGGCGCTGAAGCGCGTGCCGTGGTGCCTGACCGGCCGCGGCGTGGTCGACCACCTGGTCCCCAACACGAGGTTCCTGCGGCGCCTGGGGGTGACGCAGGGCCCCATCTCCCACATGGTGTGCAACAACCTCGGTGTCGCGTCCGTGGAGCATACGAGGTTCGTGGAGGCAGCGGAAAGGGTGAGGGAAATGGGGTTTGACCCTTCGAAGGTTGTGTTTGTCGATGCGGTGAAGGTGGTCGTGGGGACCAGCAGGGAAGTGTGGGAGAAGCGTTTGGAGGTTTACGAGAGGTGGGGTTGGTCCGGCGAGATGTGTCTTTCTGCGTTCAGAAGGTACCCTCAGTGTATGTTTATGTCGGAGGGTAAGGTCATGAGGACCATGAGGTTTTTGGTGAAGGACATGGGGTGGCCCTCCGAGGATATTTTGAGGACTCCGGGGGTTCTCAGCCCCAACTTGGAGAAGACAATTATGCCGAGGTGCCACGTTGTTAAGGCTTTGAAGTCGAGACGGTTGATAAAGAGCGATTCGTGCATTAGCTCCTTCATTTTGATCACCGAGAAGATGTTTTTGGATAGATACGTGACCCGGTTTCAGGAGCGTGTGCCGGTCCTTATGGACATATATCGAGGTCGCATTCATCACCTGTCTGATGATGTAGGACTGTAG 1368 0.5607 MTGLSLKHCRRNPRRGQGTLVEQLPCKPQKSLTVAGLSATACNRGIRNLSAWLSENDASAQISHFHTNHFYSIHQHHHHHHHHHPNPFPLSTAPTQTFPFLHFRIPVNRRPQPHPLLPHQLLRPLPRVGPQALQTGPPQKPRPSRRRPRPPPKLRVLRDPAFPPREALPQVLSAKPDKTLLPKLQFFLSVGVSTADLPKILIGNAVLLEGSLANCIARRCDILKSVLGSQDEVVAALKRVPWCLTGRGVVDHLVPNTRFLRRLGVTQGPISHMVCNNLGVASVEHTRFVEAAERVREMGFDPSKVVFVDAVKVVVGTSREVWEKRLEVYERWGWSGEMCLSAFRRYPQCMFMSEGKVMRTMRFLVKDMGWPSEDILRTPGVLSPNLEKTIMPRCHVVKALKSRRLIKSDSCISSFILITEKMFLDRYVTRFQERVPVLMDIYRGRIHHLSDDVGL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0769 455 Pfam mTERF 168 305 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 Pfam mTERF 310 423 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 Gene3D Transcription termination factor 3, mitochondrial 166 434 IPR038538 -
Ssu5g0769 455 SMART mt_12 372 407 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 SMART mt_12 340 371 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 SMART mt_12 164 193 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 SMART mt_12 234 266 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 PANTHER CGI-12 PROTEIN-RELATED 168 445 IPR003690 GO:0003690|GO:0006355
Ssu5g0769 455 MobiDBLite consensus disorder prediction 127 159 - -
Ssu5g0769 455 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 168 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0769 Ssu-Chr5 19607325 19609806 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu5g0769 mTERF 6.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0769 K15032 - gmx:100778090 419.853