Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0766 ATGCCTCCACGACTTCTTTCCCAGTGTATATCAAGTAACAAAAGAGCCGCTTTAACGGAGATAATTGATGTATTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCATTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAGATGAAACTGAGAGAATACGAATTAAAGAGGGTCATACAAGTTCTAATGAAAAATGCGTACTATGTATTGAAGAATCAGCTTGTTATATAAATGATAGAGCTGTAGGAGGATTTGTTCATGGCTGCATTGAAAATCATCTTGAGGAAGGGCAAGGTCTAGCTGGGAATGCTCTTCAAACAAATCATCCATTCTTCTCTACTGATGTGAAGACATTTGATATTAGTGAATATCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCCGCAGTTGCATTTAGGCTAAGGagtacctataccaatgatgatGATTACGTATTAGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTCAGAACAACATGTTTTATTAGACAATCTCTCGGGTGCCATGTGGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGCTCCCAAGCTGGGTTTCCAAAGGCAAAAGTCCCAGGCAATGAATGGATCAAGAAAGCAAGTTGAGATGAAGAGAAGTCCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTGCAATCAgtgatgatgatgttgaagtTTCGTTGCTTGGTAATGACGCGGAACATGTGTATGTGCTTGCTTGTGATGATGAAGGATTTGGAAGGGATTGGCAGTCTGCTGGCCAGGGTGGAATTACAGGAGATGACACGGAGCAAGTTGCTGTTAGTgatctttttcctttctatcaCAACTGA 918 0.3878 MPPRLLSQCISSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETERIRIKEGHTSSNEKCVLCIEESACYINDRAVGGFVHGCIENHLEEGQGLAGNALQTNHPFFSTDVKTFDISEYPLVHHARKYNLNAAVAFRLRSTYTNDDDYVLEFFLPVNMTGSSEQHVLLDNLSGAMWRICRSLRTVSDAELTGIEAPKLGFQRQKSQAMNGSRKQVEMKRSPVEKNVSLSVLQQYFSGAISDDDVEVSLLGNDAEHVYVLACDDEGFGRDWQSAGQGGITGDDTEQVAVSDLFPFYHN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0766 305 PANTHER PROTEIN NLP8 1 212 IPR045012 GO:0003700
Ssu5g0766 305 PANTHER PROTEIN NLP8 212 251 IPR045012 GO:0003700
Ssu5g0766 305 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 1 212 - -
Ssu5g0766 305 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 212 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0766 Ssu-Chr5 19537953 19540022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0766 8 249 NLP Transcription Factor Family AT3G59580 50.694 1.34e-86 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0766 - - gmx:100793770 419.083