Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0762 ATGGGTGTATCCCAAAAATGGTTCAGAATTGTTCGGGGGAGATTCCTCAGATCATCCAACAAAGACATCATTCTCCCACGCACAAGTGTTTGCACTAACGAAAGCGAAGAAGCCATACTTAGGAATGAAGACTTGAATTTGCCTACACCAATTTCTTCAATCAACAAGGAAGATGTTGCGGCAATTAAGATCCAAGCTTATTTCAGGGGACATCTTGCCAGACGAGCATATAGGGCTTTAAAAAGCTTGGTGAAGCTGCAAGCATTGGTTCGTGGGGTGTGGGTGAGGAAACAATCACGTATAGCGATGCAGTGTATGCACGCACTTGTACGATTACAAGTCAGGGTTCGTGCGAGGCAGCTACTTGGTAGCTTTGATAAGGAACGACTaactaatttacaaaatgtatGA 411 0.4282 MGVSQKWFRIVRGRFLRSSNKDIILPRTSVCTNESEEAILRNEDLNLPTPISSINKEDVAAIKIQAYFRGHLARRAYRALKSLVKLQALVRGVWVRKQSRIAMQCMHALVRLQVRVRARQLLGSFDKERLTNLQNV 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0762 136 Pfam IQ calmodulin-binding motif 60 78 IPR000048 GO:0005515
Ssu5g0762 136 Pfam IQ calmodulin-binding motif 81 98 IPR000048 GO:0005515
Ssu5g0762 136 SMART iq_5 79 100 IPR000048 GO:0005515
Ssu5g0762 136 SMART iq_5 56 78 IPR000048 GO:0005515
Ssu5g0762 136 ProSiteProfiles IQ motif profile. 81 108 IPR000048 GO:0005515
Ssu5g0762 136 PANTHER IQ-DOMAIN 5-RELATED 4 123 - -
Ssu5g0762 136 Gene3D - 54 108 - -
Ssu5g0762 136 ProSiteProfiles IQ motif profile. 57 85 IPR000048 GO:0005515
Ssu5g0762 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 101 IPR027417 -
Ssu5g0762 136 PANTHER OS04G0561100 PROTEIN 4 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0762 Ssu-Chr5 19507649 19508463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0762 1 123 IQD Protein Family AT3G51380 52.033 2.91e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0762 - - gmx:100788207 223.402