LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0757	ATGGGTGTATCCCAAAAATGGTTCAGAATTGTTCGGTGGAGATTCCTCAGATCATCCAACAAAGACATCATTCTCCCACGCACAAGTGTTTGCACTAACGAAAGCGAAGAAGCCATACTTAGGATTGAAGACTTGAATTTGCCTACACCAATTTCTTCAATCAACAAGGAAGATGTTGCGGCAATTAAGATCCAAGCTTATTTCAGGGGACATCTTGCCAGACGAGCATATAGGGCTTTAAAAAGCTTGGTGAAGCTGCAAGCATTGGTTCGTGGGGTGTGGGTGAGGAAACAATCACGTATAGCGATGCAGTGTATGCACGCACTTGTACGATTACAAGTCAGGGTTCGTGCGAGGCAGCTACTTGGTAGCTTTGATAAGGAACGACTaactaatttacaaaatgtatGA	411	0.4258	MGVSQKWFRIVRWRFLRSSNKDIILPRTSVCTNESEEAILRIEDLNLPTPISSINKEDVAAIKIQAYFRGHLARRAYRALKSLVKLQALVRGVWVRKQSRIAMQCMHALVRLQVRVRARQLLGSFDKERLTNLQNV	136

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0757	136	PANTHER	OS04G0561100 PROTEIN	4	123	-	-
	Ssu5g0757	136	SMART	iq_5	79	100	IPR000048	GO:0005515
	Ssu5g0757	136	SMART	iq_5	56	78	IPR000048	GO:0005515
	Ssu5g0757	136	Gene3D	-	55	108	-	-
	Ssu5g0757	136	ProSiteProfiles	IQ motif profile.	81	108	IPR000048	GO:0005515
	Ssu5g0757	136	ProSiteProfiles	IQ motif profile.	57	85	IPR000048	GO:0005515
	Ssu5g0757	136	PANTHER	IQ-DOMAIN 5-RELATED	4	123	-	-
	Ssu5g0757	136	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	58	101	IPR027417	-
	Ssu5g0757	136	Pfam	IQ calmodulin-binding motif	60	78	IPR000048	GO:0005515
	Ssu5g0757	136	Pfam	IQ calmodulin-binding motif	81	98	IPR000048	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0757	Ssu-Chr5	19433197	19434011	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0757	1	123	IQD Protein Family	AT3G51380	51.220	1.65e-35	116

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0757	-		-	gmx:100788207	216.853

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