Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0756 ATGATTTCTAGTTCTTATGCTTCCCCTTTCCCGTCGTCGCTTTTGCCAAGCGAAGCATCACCCGAGTGGAACAACAAAGCGGACAACGCATGGCAACTCACCGCGGCAACACTAGTGGGCCTTCAGAGTGTTCCTGGGCTTGTGATTCTCTACGGCAGCATGGTTAAGAGGAAATGGGCCGTGAATTCGGCCTTCATGGCCCTATACGCCTTTGCTTGTGTGCTCATTTGTTGGGTTTCGTGGGCCCACCGCATGGCGTTCGGCACCAAGCTTTTGCCATTCATGGGAAGGCCCAACCATGCTCTGGTTGACAAGTTTCTCCTTGCAAAGTCAACGATTGGGTATTTTCCAATGGCTGACTTTGTGTACTATCAATTTGCTTTTGCCGCAATTACTGTTGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGTTGTTTGTGCCTTTGTGGCTTACGTTGTCTTACACCATTGGTGCCTTCAGCATATGGGGGGCTGATGGCTTCCTTCAgggaaaaataattgattatgctgGTGGATTTGTGATTCATTTATCTTCCGGCGTCGCGGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCACATGACCGACAAAACTTTCCGCCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTTAATGGTGGAGCTTCGTTCCAAGTGGGAGAAACCACATCCTTGGCCATCTTCAATACTCATCTATGCACTGCCACAAGCCTACTCGTTTGGCTTACACTGGACATGATTGTATATACCAAGAGCTCAGTGATAGGTGCCGTCCAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGGCTTGGTGGATTCATGGGCAGCAATATTGATGGGAGCTTTGTCTGGTTCTATTCCATGGTACACTATGATGGTGTTACATAAAAAATCTGCATTCTTTCAGAGTGTGGATGATACACTAGGAGTCTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTCTACTTTCTGGTGTGTTTGCCAAACCCAACCTTCTGAGGATAATGTATCCCGGGATGCATTATTGCCCCGGCTTATTCTATAGCTTTTTTGATAGAAATGTGGGTCAAGGCTTTAGGCAAATATGGTACCAGTTACTTGGAGCTGGTTTTGTTATTGCTTGGAACGTCGTTGTTACTAGCCTCATCTGTGTTCTTATAAGCCGCATTATGGATCTTAGGATGCAAGAGGAGGACCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCATACGCATTGTGGGGTGATGGAGAGAGAATGAGGGTCCCTCTTCGTCTTCATATAAGTCCAACAATTCCTTCCTTGTGTCGGCGAAGGTTTTCAATTCCTCTCACTAGGAAAGAAGACGAATAG 1449 0.4665 MISSSYASPFPSSLLPSEASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHRMAFGTKLLPFMGRPNHALVDKFLLAKSTIGYFPMADFVYYQFAFAAITVVLLAGSLLGRMNFYAWMLFVPLWLTLSYTIGAFSIWGADGFLQGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRISHDRQNFPPNNIIHMLGGAGFLWMGWTGFNGGASFQVGETTSLAIFNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDSWAAILMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPNLLRIMYPGMHYCPGLFYSFFDRNVGQGFRQIWYQLLGAGFVIAWNVVVTSLICVLISRIMDLRMQEEDLEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRRFSIPLTRKEDE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0756 482 Pfam Ammonium Transporter Family 30 443 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu5g0756 482 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Ssu5g0756 482 PANTHER AMMONIUM TRANSPORTER 7 472 - -
Ssu5g0756 482 TIGRFAM amt: ammonium transporter 28 443 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu5g0756 482 PANTHER AMMONIUM TRANSPORTER MEP2 7 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu5g0756 482 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu5g0756 482 SUPERFAMILY Ammonium transporter 23 425 - -
Ssu5g0756 482 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005887
Ssu5g0756 482 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005887
Ssu5g0756 482 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005887
Ssu5g0756 482 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0756 Ssu-Chr5 19395806 19399410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0756 118 451 Inorganic Solute Cotransporters AT2G38290 60.778 4.20e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0756 K03320 - gmx:100815876 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2241 2 78920488 78925749 Ssu5g0756 5 19395806 19399410 PCT