Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0752 ATGGCTGATTCTCCTCTCGCAAGGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCGGTCAAGATCAAGGTCTAGGTCGAGGTCGAGATCTAGGCCTAGACAAAGGCCAAGATCCCGTTCAAGGAGTCGTGGCAGgTCAAGGTCAAGAAGTCATGGAAGGTCTGAGCCTTCAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCAAGGGTCAGCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACAAATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGTTGAAGATGCGGACCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTCCATCACTGTTGAGCGGTCACGAAGAAAACGTGGAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGAGACTATGGCTATCGTGGTGACCGGGGAAGGTATCGTGATGGTCCTGACCGTGAGGATTATTCACGTCGTAGGTCTCCAAGGCGTTCACCATATAGAGGTGGCCAGGATTATTCACCCCGGCGCTCACCCTATGGGGGAAGGTCTAGGAGTGATAGGTCTAGGCCGCTTCCTTATTCTCCACATGTTAGCCCAGACAGGAAGTATGCTCGCGGAACTAGGATTAGTTTCATAGCTAGCTCAAAGAATCGAAGTTTGTGGGGATATCTTGAGGTTTCACCGGAGAGCCAAATGTCCTAA 768 0.487 MADSPLARNSRSPSPWKARSRSRSRSRSRSRPRQRPRSRSRSRGRSRSRSHGRSEPSNPGDTLYVTGLSSRVSERDLEEHFSKEGKVSSCFLVVEPRTQISRGFAFVTMESVEDADRCIKYLNQSVLEGRSITVERSRRKRGRTPTPGHYLGLKNTRDYGYRGDRGRYRDGPDREDYSRRRSPRRSPYRGGQDYSPRRSPYGGRSRSDRSRPLPYSPHVSPDRKYARGTRISFIASSKNRSLWGYLEVSPESQMS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0752 255 SUPERFAMILY RNA-binding domain, RBD 55 170 IPR035979 GO:0003676
Ssu5g0752 255 PANTHER RNA RECOGNITION MOTIF 2 229 - -
Ssu5g0752 255 SMART rrm1_1 62 135 IPR000504 GO:0003723
Ssu5g0752 255 MobiDBLite consensus disorder prediction 18 48 - -
Ssu5g0752 255 CDD RRM_RBMX_like 60 139 - -
Ssu5g0752 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Ssu5g0752 255 MobiDBLite consensus disorder prediction 1 64 - -
Ssu5g0752 255 MobiDBLite consensus disorder prediction 1 17 - -
Ssu5g0752 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Ssu5g0752 255 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 229 - -
Ssu5g0752 255 MobiDBLite consensus disorder prediction 133 228 - -
Ssu5g0752 255 MobiDBLite consensus disorder prediction 158 187 - -
Ssu5g0752 255 Gene3D - 7 145 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0752 Ssu-Chr5 19336232 19340003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0752 60 143 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 3.14e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0752 K12897 - gmx:100499944 288.885