Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0749 ATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTATTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTGCTAGCCTATTGAGTGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTcagATGGGTGCTGTTGAAATGAGCTTTGATGATGTTCAAAACATCTTTGACATTGATGGCGCCAAAGGGTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGAAAGTTTCATGTTCCGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACAGTTAGAAGTTTGCCTCATTGTCATCACGTGTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCGTGCCCATTATGCAGAAGGGATCTGTAA 534 0.4382 MTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEMSFDDVQNIFDIDGAKGLSRDSVEKIPKITITSDNNVDASGEKVSCSVCLQDFQLGETVRSLPHCHHVFHLPCIDKWLIKHGSCPLCRRDL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0749 177 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 177 IPR044523 -
Ssu5g0749 177 Pfam Ring finger domain 131 174 IPR001841 -
Ssu5g0749 177 CDD RING-H2_PA-TM-RING 132 174 - -
Ssu5g0749 177 SUPERFAMILY RING/U-box 131 177 - -
Ssu5g0749 177 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Ssu5g0749 177 SMART ring_2 132 173 IPR001841 -
Ssu5g0749 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 177 IPR013083 -
Ssu5g0749 177 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0749 Ssu-Chr5 19278648 19279609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0749 1 177 C3H Transcription Factor Family AT5G66070 79.661 2.07e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0749 - - gmx:100816939 335.109