Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0747 ATGTTGCTGGAATTTATTGCTGGCATTTTAACAGCAGTGGTAGTGACCTTACTCTATTTCCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGAAGTTAGGCTCCTTTCAGCTGTAAAGCACAGGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACGAGATGGAGCCAAAATACTAGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGGTAAAAGGAGCTTAACTTGGAAGCAAAGAGTAAAGATAGCAATAGGAGCAGCAAGAGGGATAGCTTATTTGCATGAAGGGGTGAAGCCAAGCATAATTCATCGTGACATCAAACCAAGTAACATCCTACTAGGGGAAGGTTTTGAGGCAAAGGTTTCAGATTTTGGGCTGGTCAAATCAGGACCAACTGGTGATCAGTCACATGTCAGCAGCCAGATCAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGATGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGAAAACCAATGTAGTCAACATATTATTGACTGGGCAAGGCCAAGCTTAGAGAAGGGTTGTGTTGAAGAAATCATGGATGCAAATCTACTATGTCAAAGTGAGCCATGCAACATGAAAGTTTTGCTAAAGATGGGGCAACTTGCTTTAAGATGTGTGGTTGAGGAACCAAATCATCGCCCTACAATGACCCAGGTGTGTCAAGAACTAGAGCAAACCCTCCGCTCAGCTGATAGCTTCAATAATAAGCAGTCTTCAAAGGGATTCCTTGGACCAATTGGCTCATCCCAGCAATCAGCAAATTCAGAGACTCGGGGATCAGTTGAATCATACGATTGTTCACAAAGCTTTGTTAGTATAGACGGTGTTGGATTTCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAGACTTAAGGTGCCTAGAAAATAATAGCATTAGTATTGACATGGATAGAAAACAACAGTACTAG 1077 0.4132 MLLEFIAGILTAVVVTLLYFLFRRKVIPFLKQRKTLKEVRLLSAVKHRNLIGLVGYCEEPERDGAKILVYEYVPNGSLLEYIMGKRSLTWKQRVKIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTENQCSQHIIDWARPSLEKGCVEEIMDANLLCQSEPCNMKVLLKMGQLALRCVVEEPNHRPTMTQVCQELEQTLRSADSFNNKQSSKGFLGPIGSSQQSANSETRGSVESYDCSQSFVSIDGVGFQKFHVDMDSFSFKSTDLRCLENNSISIDMDRKQQY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0747 358 Gene3D Phosphorylase Kinase; domain 1 27 73 - -
Ssu5g0747 358 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0747 358 Pfam Protein kinase domain 31 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0747 358 Gene3D Transferase(Phosphotransferase) domain 1 74 288 - -
Ssu5g0747 358 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0747 358 SUPERFAMILY Protein kinase-like (PK-like) 31 269 IPR011009 -
Ssu5g0747 358 PANTHER OS01G0750732 PROTEIN 33 310 - -
Ssu5g0747 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0747 Ssu-Chr5 19047448 19049845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0747 38 277 Receptor kinase-like Gene Family AT1G51850 45.679 1.76e-64 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu5g0747 Pkinase 7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0747 - - var:108328541 576.63