Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0746 ATGCTATCAAGGTTGATGGACTTTCTGACTGCCTGCTGGCGGCGAAGATCCTCGGACGGCAAGGGTTCCGAGGTTTCGGGGCGGAAGGAGGGGCTGCTGTGGTACAAGGATGCCGGGCAGCACTTGTTTGGTGAATACTCAATGGCGGTTGTTCAGGCCAACAACTTGCTCGAGGACCAGAGCCAGATTGAGTCTGGTCCTCTCAGCTTGCTTGACACCGGCCCTTACGGGACTTTTGTTGGTGTTTATGATGGCCACGGTGGACCTGAGACGTCACGCTACGTCTGTGATAACCTCTTCCAACATTTAAAACgattcgCATCTGAGCAGAAGTCCATGTCTGTGGAGGTTATTCGGAAGGCGTACCAAGCCACGGAAGAAGGCTTTTTGTCAGTGGTTACCAAACTGTGGCCTATGAATCCCCAGATTGCTGCTGTGGGATCTTGTTGTTTGGTTGGCGTGATTTGTGGTGGTACTCTCTATATTGCTAACCTTGGTGATTCCCGTGCTGTGCTTGGGCGGGTTGTCAGAGCAACTGGGGAGGTTTTGGCAATCCAGCTTTCGTCAGAGCATAATGTGGGCATAGAATCTGTGAGACAAGAGATGCATTCTTTGCATCCGGATGACTCAAAAATTGTGGTACTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGGTTTCTAGATCCATTGGTGATGTATACCTAAAAAAGGCAGAATTCAACAAGGAACCATTATATGCTAAGTTTCGTCTTCGGGAAGCTTTTAAGAGGCCCATTTTGAGCTCTGACCCATCAATTTCTGTTCATGAACTTCAACAACATGATCAATTTCTCATATTTGCTTCTGATGGTCTTTGGGAACACCTTAGCAATCAGGATGCTGTTGATATAGTTCAAAACAACCCACTCAATGGAATTGCTCGGAGGCTCATCAAAGCTGCTTTGCAGGAAGCagcaaaaaagagagagatgaggTACTCTGACTTGAAGAAAATTGACCGCGGTGTCCGCCGGCATTTCCACGATGACATCACAGTTGTAGTTGTATTTCTTGACTCCAATCTTGTCAGCAGAGCCAGCTCAGTAAGAGGTCCTCCTTTATCATTGAGAGGAGCCGGTGTTCCCCTACCTTCTAGATCTTTGGCTCCCTGTGCTGCACCTATGGAAACTTAG 1179 0.469 MLSRLMDFLTACWRRRSSDGKGSEVSGRKEGLLWYKDAGQHLFGEYSMAVVQANNLLEDQSQIESGPLSLLDTGPYGTFVGVYDGHGGPETSRYVCDNLFQHLKRFASEQKSMSVEVIRKAYQATEEGFLSVVTKLWPMNPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVGIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNKEPLYAKFRLREAFKRPILSSDPSISVHELQQHDQFLIFASDGLWEHLSNQDAVDIVQNNPLNGIARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRASSVRGPPLSLRGAGVPLPSRSLAPCAAPMET 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0746 392 Gene3D - 31 363 IPR036457 -
Ssu5g0746 392 ProSiteProfiles PPM-type phosphatase domain profile. 42 353 IPR001932 -
Ssu5g0746 392 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 383 - -
Ssu5g0746 392 PANTHER ALPHABET, ISOFORM E-RELATED 6 383 - -
Ssu5g0746 392 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Ssu5g0746 392 Pfam Protein phosphatase 2C 78 322 IPR001932 -
Ssu5g0746 392 CDD PP2Cc 43 353 IPR001932 -
Ssu5g0746 392 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Ssu5g0746 392 SMART PP2C_4 37 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0746 Ssu-Chr5 19036090 19043326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0746 1 381 PP2C-type Phosphatase Gene Family AT3G51370 77.953 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0746 K01102 - gmx:100777920 754.977