Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0731 ATGGCATCACCCAATTTTTCCCCCAACAACACCAAGAACAACGCCGACCCCTTCATCGTCGAGGACCTCTTCGACTTCCCCAACGACGACGCTGTCATCACCGACGCCACCTTCGACTCCGTCCCCGGCAACTCCACCGACTCTTCCACCGTAACCGCCGTTGATAGCTGCAACTCCTCCTCCTTCTCCGGCTCCGACCCCAACCCCGTTGCCGATATTGGTAGCCGGAATCTCTCAGACGGCCATTTCTCCGGTGACCTCTGCGTTCCGTATGATGATATAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGCAGCTGCAGCTGATATCAGGCATGAAGGGGCCAAACGACGACGTATCAGAGGCCCGCGGGTTCCACTCGGAGCCCACCAGAAACAGCCCGATATTCGATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGTAGCAAGAGGTCCCGCGGGCCCCCATGCAACTGGACCTCGCGCCTCCTCGTCGTGTCCCCAACGACGTCGTCTACAGAGCCCGACGTCTTCGTTCCCGCCACCGCCACTCCGCCCGGCCCGGTCCCCTCGAAAAAGCCCGCGAAGGCGGCTCCGAGGAAGAAGGACAGCGGCGACGGCAGCGGCGGCGACGGGCGCAGGTGTCTGCATTGCGCCACGGACAAGACGCCGCAGTGGCGGACCGGGCCCATGGGCCCGAAGACGCTGTGCAACGCCTGCGGCGTGAGGTACAAGTCGGGCCGGCTGGTGCCCGAGTACAGGCCCGCCGCGAGCCCAACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCACCAGCAACAGCAGTTCCTACAACaacaccaccatcatcatcagaACATGATGTTCGATGTATCCAACGGTGACGATTACTTGATCCACCAACACGTGGGGCCCGATTTCCGGCAGCTGATCTAG 1014 0.6085 MASPNFSPNNTKNNADPFIVEDLFDFPNDDAVITDATFDSVPGNSTDSSTVTAVDSCNSSSFSGSDPNPVADIGSRNLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQQLQLISGMKGPNDDVSEARGFHSEPTRNSPIFDSEVSVPAKARSKRSRGPPCNWTSRLLVVSPTTSSTEPDVFVPATATPPGPVPSKKPAKAAPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQQHHHHHQNMMFDVSNGDDYLIHQHVGPDFRQLI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0731 337 PANTHER GATA TRANSCRIPTION FACTOR 10 337 - -
Ssu5g0731 337 MobiDBLite consensus disorder prediction 205 223 - -
Ssu5g0731 337 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Ssu5g0731 337 Gene3D - 217 305 IPR013088 GO:0006355|GO:0008270
Ssu5g0731 337 MobiDBLite consensus disorder prediction 171 187 - -
Ssu5g0731 337 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Ssu5g0731 337 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Ssu5g0731 337 PIRSF Txn_fac_GATA_plant 1 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu5g0731 337 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Ssu5g0731 337 MobiDBLite consensus disorder prediction 124 223 - -
Ssu5g0731 337 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Ssu5g0731 337 PANTHER GATA TRANSCRIPTION FACTOR 10 337 - -
Ssu5g0731 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0731 Ssu-Chr5 18740660 18742334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0731 18 337 C2C2-Gata Transcription Factor Family AT5G25830 53.254 9.52e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu5g0731 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0731 - - gmx:100800146 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0731 5 18740660 18742334 Ssu5g0731 5 18740660 18742334 ECH