Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0728 ATGAGAGTGTCGGCCCGGAATAATTCTGAGGCAGAGAGCAGCTCGACCTCATTCTCGTCACCGTCACCGTCACTGTCGTTGCCGCGAACTAAAACCAACGAACCCAAGACGGAGAAGCGCAACCGCGACTCGAACAAGCACCCGGTGTACCGCGGGGTGCGCATGCGGAACTGGGGGAAATGGGTGTCCGAAATCCGCGAGCCGCGCAAGAAATCGCGCATATGGCTGGGCACATTCCCCACGCCGGAAATGGCGGCGAGGGCGCACGACGTGGCAGCTCTGAGCATAAAGGGGAACGGCGCCATTCTCAACTTCCCCGAACTCGCGCCCTTGCTTCCTCGTCCTGCCTCCTTGGCCCCCCGCGACGTGCAAGCCGCGGCGACCAAGGCGGCGCACATGGACTTGCCTACTTCTTCGTCCACGTCGTCGTCGTCGTTGGCCCCGACGACGTCGTCATCCTCGTCGTCTTTGTCGTCGCTGGTTTCCGCGACGGACTTGTCCGCTGCGTCCGAGGAGCTGAGCGAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGGAAGGAGTTTGTGTTCGTGGACTCGCAGGACACGTGGATGTCTCAGCCACCCATGGTACCGTGGTTGCAACCTGCGTACGACGGTCGCGATGCCGATGAGTTCGCGGTGCCAGCAGAGAGTGGGGTTGTGACTAGTTTTGAGAGTTTTCTGTGGGATTACTGA 729 0.6049 MRVSARNNSEAESSSTSFSSPSPSLSLPRTKTNEPKTEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNGAILNFPELAPLLPRPASLAPRDVQAAATKAAHMDLPTSSSTSSSSLAPTTSSSSSSLSSLVSATDLSAASEELSEIIELPRLETSYELGKEFVFVDSQDTWMSQPPMVPWLQPAYDGRDADEFAVPAESGVVTSFESFLWDY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0728 242 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 241 - -
Ssu5g0728 242 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Ssu5g0728 242 MobiDBLite consensus disorder prediction 133 157 - -
Ssu5g0728 242 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Ssu5g0728 242 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Ssu5g0728 242 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Ssu5g0728 242 MobiDBLite consensus disorder prediction 1 50 - -
Ssu5g0728 242 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Ssu5g0728 242 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Ssu5g0728 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 241 - -
Ssu5g0728 242 MobiDBLite consensus disorder prediction 123 157 - -
Ssu5g0728 242 MobiDBLite consensus disorder prediction 1 31 - -
Ssu5g0728 242 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Ssu5g0728 242 MobiDBLite consensus disorder prediction 32 50 - -
Ssu5g0728 242 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0728 Ssu-Chr5 18492767 18493495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0728 29 216 AP2-EREBP Transcription Factor Family AT5G11590 64.948 8.79e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g0728 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0728 K09286 - gmx:100305349 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0728 5 18492767 18493495 Ssu5g0728 5 18492767 18493495 ECH