Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0725 ATGGGCATTTGCAACATCATCTGTAACTATCCTTTCAACAACCATTTGCTGGTGTTCATGATggttctttctttcatttttaacgTTCAGGCTCAAGACAGCAGGGACACAGATACCATGCCAGATTTCCCCCAACCTGTCCGTCCAAGCAAGGTGGTTGTAATAGTGGTCCTCTCAATGTTGTTCACCGTGTCATTTCTCTTACTTCTATATATAAGGTTCCGCAGAGCCACCCCTGTTGAACTCTTCAACAGAAGTAGCCATCATGTACCTAATTTTCAAGCACTAACTCGATCAAGGTCAAGGCTTTCAGGGATAGACAGACAAGTGATCGAAACACTTCCATTTTTCAGGTTCTCTTCCCTAAAGGGATCCAAACAAGGGTTAGAATGCACGGTATGCCTCTCACAGTTTGAGGACACTGAGATTCTTAGACTATTACCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAGGTGGCTTGAAAGTCACTCTAGCTGCCCTCTTTGTAGGAACGAAGTTGACCCTTTAGACATCAAGAACTTCATCTACTCAATCAGTTCAAGGTTCCTAAGAGTTCCTTCAAATTTAACTGAGGACACTAACGTTGAAATCTTTGTTCACAGGGAACCGTCCCATCGATTGTCATCATCAAGGTTTAACATTGGAAGCAGGTTTTGGAATTTGGGCAGGagcaacaaagaagaaaatctCATTGATCAAGAGGTCTGTAGTAGTAGTGGCACAAATGGGACACACGTGCATAAGTTCAATCACAAAATTGTGGTCTCTGATGTTGTTAGAAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAAGAGTGAGATGCTTCATGACATGTCAAGCAGAAGATTCTCTCCCTCTAATGAAATGTTTCGTGGAAATTCAAGCCTTCCCTCTATTTTCAATGAAGATGGAAGttcatttatgttaattaatccTGCTGAGAAGAGATCTATGTCTGAGATTGCTCATGTTCCTAGATTCATAGAAACGTGCAAGCAGAATGGAATGGAAGAAGATGTGGCATCAAGTGGGAACAGTGAGAGGGAACAGAGGTTGAGGAGGATTTGGTTGGCAATTGCTCAACGAACAGTGCAATGGTTTGCGGGACAAGAAAGAAACTCAAGCGAATTAGAGCACAAACATTTAGCTCCAAATGTTTGA 1206 0.4046 MGICNIICNYPFNNHLLVFMMVLSFIFNVQAQDSRDTDTMPDFPQPVRPSKVVVIVVLSMLFTVSFLLLLYIRFRRATPVELFNRSSHHVPNFQALTRSRSRLSGIDRQVIETLPFFRFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDRWLESHSSCPLCRNEVDPLDIKNFIYSISSRFLRVPSNLTEDTNVEIFVHREPSHRLSSSRFNIGSRFWNLGRSNKEENLIDQEVCSSSGTNGTHVHKFNHKIVVSDVVRRSRWSDLNSSDMLSLKSEMLHDMSSRRFSPSNEMFRGNSSLPSIFNEDGSSFMLINPAEKRSMSEIAHVPRFIETCKQNGMEEDVASSGNSEREQRLRRIWLAIAQRTVQWFAGQERNSSELEHKHLAPNV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0725 401 PANTHER RING-H2 FINGER PROTEIN ATL4J 22 302 - -
Ssu5g0725 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 308 396 - -
Ssu5g0725 401 SMART ring_2 131 172 IPR001841 -
Ssu5g0725 401 SUPERFAMILY RING/U-box 110 178 - -
Ssu5g0725 401 CDD RING-H2_PA-TM-RING 130 173 - -
Ssu5g0725 401 PANTHER RING-H2 FINGER PROTEIN ATL4J 308 396 - -
Ssu5g0725 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 180 IPR013083 -
Ssu5g0725 401 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Ssu5g0725 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 302 - -
Ssu5g0725 401 Pfam Ring finger domain 130 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0725 Ssu-Chr5 18424509 18425714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0725 48 388 C3H Transcription Factor Family AT2G20030 40.556 2.60e-76 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0725 K10664 - gmx:100803881 625.55