Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0724 ATGGACGGGGTCCTCGGAGGAAAGTATAAAATGGGTAAAAAAATTGGGAGCGGATCATTCGGTGAAATTCACATTGGGGCACATATCGAGACTTCTGAAATTGTGGCCATCAAGATGGAGAACAGGAAAACAAATCAACCACAGCTATTGTATGAGTCCAAGTTATATAGTATTCTTCAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTGTGGTACTGATGGAGACAATAACGTTCTTGTTATTGAACTTCTGGGACCAAGTCTTGAAGACCTCTTTTTCTTCTGTGGGAGGAAATTTTCACTCAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACAAGGATAGAGTATATGCACTCCAAAGGATTTTTGCATAGAGACATCAAACCCGATAACTTCCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTATATGATTGATTTTGGACTAGCAAAAGGATATAGGGACCCTATCACAAATAAGCATATCCCTTACAGAGAGAACAAAGGCTTAACAGGGACTGCACGTTATGCAAGTTACAATACTCACTCAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCCCTTGGCTAtgttttaatgtactttttaaGAGGAAGccTTCCTTGGCAGGGTCTGCAAGCTGTCACCAAAAagcaaaaatatgacagaatttgCAAAATGAAGTTATCAACTCCCATTGAGATACTTTGCAAGTCATATCCTGTGGAGTTTGCTTCTTACTTTCATTATTGCCGCTCTTTGACATTTGATCAACGGCCAGATTATGGACTTTTGAAGCGTCTGTTTCGCAATTTGTTCACTCGTGCAGGATATGATTCTGACTATTTATTTGACTGGACTATTCTAAAATATCAGCAGATGCAACAGCATAAGACACAAAGCCAATCACCTGCTCCACTTGCTGTGCCTACTAGTCTTGAACCAGTGGATGAGGATAATCATAAAGGAGTCAATGATTCCAATCAAATTGCTGTGACAACACCATCGCTCAATGTTCATCATCCACGTGTTTGTAAGATCACAGCATCTAATGTTCAGAATCTTAATGCCAAGATTCCAACAGAGAAACATACTATGAACAATGGTTCATCTATGTCAACTGCCATGCCCAGAGTTTCCACAGAAAATGTTTCAAAACCATTAAGGCCAGTAGGAACCTCAAATGTGGGTCATGGATTTGGGAATAAGTCTGGTGCTTCAGGAAGCTTTGTTCCTTCACTACGCCGAGTTTCATCAACTAAACAATAG 1281 0.3919 MDGVLGGKYKMGKKIGSGSFGEIHIGAHIETSEIVAIKMENRKTNQPQLLYESKLYSILQGGSGIPRMKWCGTDGDNNVLVIELLGPSLEDLFFFCGRKFSLKTVLMLADQMLTRIEYMHSKGFLHRDIKPDNFLMGLGKKANQVYMIDFGLAKGYRDPITNKHIPYRENKGLTGTARYASYNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAVTKKQKYDRICKMKLSTPIEILCKSYPVEFASYFHYCRSLTFDQRPDYGLLKRLFRNLFTRAGYDSDYLFDWTILKYQQMQQHKTQSQSPAPLAVPTSLEPVDEDNHKGVNDSNQIAVTTPSLNVHHPRVCKITASNVQNLNAKIPTEKHTMNNGSSMSTAMPRVSTENVSKPLRPVGTSNVGHGFGNKSGASGSFVPSLRRVSSTKQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0724 426 PANTHER CASEIN KINASE-RELATED 1 410 - -
Ssu5g0724 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ssu5g0724 426 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0724 426 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 410 - -
Ssu5g0724 426 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0724 426 MobiDBLite consensus disorder prediction 401 426 - -
Ssu5g0724 426 MobiDBLite consensus disorder prediction 366 426 - -
Ssu5g0724 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0724 426 Gene3D Transferase(Phosphotransferase) domain 1 1 341 - -
Ssu5g0724 426 MobiDBLite consensus disorder prediction 366 394 - -
Ssu5g0724 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu5g0724 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0724 Ssu-Chr5 18386499 18393152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0724 4 213 Miscellaneous Gene Families AT3G23000 27.928 7.05e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu5g0724 Pkinase 1.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0724 K08960 - gmx:100782913 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3291 1 85483035 85488692 Ssu5g0724 5 18386499 18393152 PCT