Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0720 ATGATCGCTGTTATTGAGGGAGGGAAGGTGGTGGAAATTGGCAATCATGAGGAACTCATTTCCAACCCAAATAATGTGTATGCATCTCTTGTTCAAATCCAAGAACAGCCTCTTCTCAAGGCCACGTTTCTGTGGATCCTTACTTGGGAGGGTCATCAAGGTACTTGGGAGGGTCATCAAGGAGAGTCATCATCCCGTGCAACAAGCTTTCGTGGTAGTTTCCGTTCAGATAAAGAATCAACTAGCCGTGCTTTTGGTGATGGAGCAGAAAATGTTGGAAGTTCAAGGCATGTCTCAGCAAGAAGACTGTATTCCATGATTGGTCCTGACTGGCTTTATGGTGTTTTTGGAACCTTGGGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTCGTAGCTTATTACATGGACTGGGATACAACACGtcatgaagtgaaaaaaattgcTTTCCTCTTTTGTGGGGCAGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGAACGACTTACCCTTCGGcgagagaaaaaatgttttccGCAAAGCGTATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTAAGTAATATCCGTACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAATCGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGttctttattttctcatcttatGGCCTTGCCTTGTGGTATGGATCTGTGTTGATGGAAAAGGAGCTTTCTAGCTTCAAATCAGTTATGAAGTcatttatggttttaattgtaACAGCACTTGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGGAATATTGAGTGATGTTGGAGAAGAGCTGAAGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTCAGCTACCCTTCAAGGCCAGATGtggttatttttaatgatttcaatCTTACAGTGCCTGCAGGGAGGAATATTGCCTTGGTGGGGCATAGTGGTTGTGGTAAAAGCTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGGTTGATGGAAAAGACATCCAGAAACTCAATTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCGGCTCTTTTTGCAACatcaatttatgaaaatattcttTATGGAAAGGAAGGAGCCTCAGAAGCAGAAGTGATTGAAGCAGGTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGGGTTCAACTGTCTGGTGGCCAGAAACAAAGGGTAGCTATTGCCAGGGCTGTTTTGAAAAACCCCGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCGGAGCGTGTGGTGCAGCAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTATCCACAATAAGAAATGCAGACCAAATAGCAGTTTTAGAGGACGGAAAGATAGTTGAGCGAGGGACTCATTCAAGACTTTTAGAGAACACAGATGGAGCATACTACAAATTAGTCAGTCTTCAACAGCAGCAGCATGTACAGTAA 1758 0.4158 MIAVIEGGKVVEIGNHEELISNPNNVYASLVQIQEQPLLKATFLWILTWEGHQGTWEGHQGESSSRATSFRGSFRSDKESTSRAFGDGAENVGSSRHVSARRLYSMIGPDWLYGVFGTLGAFIAGAQMPLFALGISHALVAYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGNDLPFGERKNVFRKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILSDVGEELKTVEGTIELKRIHFSYPSRPDVVIFNDFNLTVPAGRNIALVGHSGCGKSSVISLILRFYDPTSGKVMVDGKDIQKLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVIEAGKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIRNADQIAVLEDGKIVERGTHSRLLENTDGAYYKLVSLQQQQHVQ 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0720 585 Pfam ABC transporter transmembrane region 196 294 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0720 585 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 193 IPR039421 -
Ssu5g0720 585 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 195 581 IPR039421 -
Ssu5g0720 585 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 195 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0720 585 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1 193 - -
Ssu5g0720 585 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 195 581 - -
Ssu5g0720 585 Pfam ABC transporter 360 508 IPR003439 GO:0005524
Ssu5g0720 585 Gene3D - 2 69 IPR027417 -
Ssu5g0720 585 CDD ABC_MTABC3_MDL1_MDL2 341 579 - -
Ssu5g0720 585 ProSitePatterns ABC transporters family signature. 480 494 IPR017871 GO:0005524
Ssu5g0720 585 MobiDBLite consensus disorder prediction 57 71 - -
Ssu5g0720 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 579 IPR027417 -
Ssu5g0720 585 MobiDBLite consensus disorder prediction 56 92 - -
Ssu5g0720 585 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 577 IPR003439 GO:0005524
Ssu5g0720 585 SMART AAA_5 368 554 IPR003593 -
Ssu5g0720 585 Gene3D ABC transporter type 1, transmembrane domain 70 196 IPR036640 GO:0005524|GO:0016021
Ssu5g0720 585 Gene3D - 331 580 IPR027417 -
Ssu5g0720 585 Gene3D ABC transporter type 1, transmembrane domain 197 582 IPR036640 GO:0005524|GO:0016021
Ssu5g0720 585 SUPERFAMILY ABC transporter transmembrane region 101 322 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0720 Ssu-Chr5 17980815 17984148 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0720 197 585 Calmodulin-binding Proteins AT2G36910 59.033 8.30e-155 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0720 K05658 - gmx:100809752 726.087