Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0719 ATGGTACAAACTTCTATTTATAATCTACGAAACTTGAAGTTTAAGCTgttgatttatcattttaacttCTTGAACTTTGATCTTATAGTTGGGAACTTCATGCACTACATAAGCCGATTTATCGCGGGCTTTACCATTGGCTTTGTCAGAGTGTGGCAGATCAGTTTAGTGACACTTGCTATTGTACCCTTAATTGCCCTCGCTGGAGGTCTTTACGCATACGTGACCATTGGTCTTATTGGAAAAGTTCGAAAAGCATATGTGAGGGCTGGTGAAATCTCTGAAGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATATAAAGCGGCTCTAATGAACACATATAGAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTCTATGCATTGTGTCCTTTTCCTATCATGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATCGCCAATGGTGGCGACGCTTTCACTACCATGCTCAATGTAGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTTCTGCATTTATCAGAGCTAA 597 0.4137 MVQTSIYNLRNLKFKLLIYHFNFLNFDLIVGNFMHYISRFIAGFTIGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRKAYVRAGEISEEVIGNVRTVQAFAGEERAVRSYKAALMNTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDIFCIYQS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0719 198 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 30 190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0719 198 Pfam ABC transporter transmembrane region 30 181 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0719 198 Gene3D ABC transporter type 1, transmembrane domain 25 195 IPR036640 GO:0005524|GO:0016021
Ssu5g0719 198 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 30 194 - -
Ssu5g0719 198 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 30 194 IPR039421 -
Ssu5g0719 198 SUPERFAMILY ABC transporter transmembrane region 29 189 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0719 Ssu-Chr5 17975864 17979617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0719 30 192 Calmodulin-binding Proteins AT2G36910 45.399 5.66e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0719 K05658 - gmx:100809752 303.138