Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0718 atggttggGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCAGAGCTAAGGCAGCAGCTTATCCCATTTTTGAGATGATACAGAGGGACACAATGAGCAAAATCAGCACAGAAAATGGTCAAAAGTTAAGCAAATTGGAAGGTCACATCCAATTTGCGGATGTCTGTTTCAGTTATCCATCTCGTCCTGATGTGgtTGGTGAGAGAGGGATACAATTATCAGGGGGACAGAAACAAAGGATTGCAATATCTCGTGCTATAGTTAAGAACCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCCGAGAAAAGTGTACAGGAGGCTCTTGATCGCGTTATGGTGGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCGTTAGGAACGCTGATATGATCGCTGTTATTGAGGGAGGGAAGGTGGTGGAAATTGGCAATCATGAGGAACTCATTTCCAACCCAAATAATGTGTATGCATCTCTTGTCCAAATCCAAGAAACAGCCTCTTCTCAAGGCCATGTTTCTGTGGATCCTTACTTGGGAGGGTCATCAAGGCGCCTAGGAGAGTCATCATCCCGTGCAACAAGCTTTCGTGGTAGTTTCCGTTCAGATAAAGAATCAACTAGCCGTGCTTTTGGTGATGGAGCAGAAAATGTTGGAAGTTCAAGGCATGTCTCAGCAAGAAGACTGTATTCCATGATTGGTCCTGACTGGCTTTATGGTGTTTTTGGAACCTTGGGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTCGTAGCTTATTACATGGACTGGGATACAACACGtcatgaagtgaaaaaaattgcTTTCCTCTTTTGTGGGGCAGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGGGcgagagaaaaaatgttttccGCTATTTTGAAAAGTGAAATTGGCTGGTTTGATGACACAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACTGATGCAACATTTTTAAGAACTGTAGTTGTTGATCGTTCAACGATTCTTCTGCAGAATGTTGGTCTGGTAGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATAACGCTTGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACCTCAGCAAAGCGTATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTAAGTAATATCCGTACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAATCGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGttctttattttctcatcttatGGCCTTGCCTTGTGGTATGGATCTGTGTTGATGGAAAAGGAGCTTTCTAGCTTCAAATCAGTTATGAAGTcatttatggttttaattgtaACAGCACTTGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGGAATATTGAGTGATGTTGGAGAAGAGCTGAAGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTCAGCTACCCTTCAAGGCCAGATGtggttatttttaatgatttcaatCTTACAGTGCCTGCAGGGAGGAATATTGCCTTGGTGGGGCATAGTGGTTGTGGTAAAAGCTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGGTTGATGGTGAGAGAGGGGTTCAACTGTCTGGTGGCCAGAAACAAAGGGTAGCTATTGCCAGGGCTGTCTTGAAAAACCCCGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCCGAGCGTGTGGTGCAGCAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTGTCCACAATAAGAAATGCAGACCAAATAGCAGTTTTAGAGGACGGAAAGATAATTGAGCGAGGGACTCATTCAAGACTTTTAGAGAACACAGATGGAGCATACTACAAATTAGTCAGTCTTCAACAGCAGCAGCATGTATAG 2232 0.4194 MVGSLGQAAPDISAFIRAKAAAYPIFEMIQRDTMSKISTENGQKLSKLEGHIQFADVCFSYPSRPDVVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTVRNADMIAVIEGGKVVEIGNHEELISNPNNVYASLVQIQETASSQGHVSVDPYLGGSSRRLGESSSRATSFRGSFRSDKESTSRAFGDGAENVGSSRHVSARRLYSMIGPDWLYGVFGTLGAFIAGAQMPLFALGISHALVAYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEIGWFDDTNNTSSMLSSRLETDATFLRTVVVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILSDVGEELKTVEGTIELKRIHFSYPSRPDVVIFNDFNLTVPAGRNIALVGHSGCGKSSVISLILRFYDPTSGKVMVDGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIRNADQIAVLEDGKIIERGTHSRLLENTDGAYYKLVSLQQQQHV 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0718 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 570 736 IPR003439 GO:0005524
Ssu5g0718 743 CDD ABC_6TM_Pgp_ABCB1_D2_like 240 555 - -
Ssu5g0718 743 Pfam ABC transporter 637 667 IPR003439 GO:0005524
Ssu5g0718 743 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 68 633 - -
Ssu5g0718 743 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 68 633 IPR039421 -
Ssu5g0718 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 174 IPR027417 -
Ssu5g0718 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 7 172 IPR003439 GO:0005524
Ssu5g0718 743 ProSitePatterns ABC transporters family signature. 75 89 IPR017871 GO:0005524
Ssu5g0718 743 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 68 IPR039421 -
Ssu5g0718 743 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 633 740 IPR039421 -
Ssu5g0718 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 738 IPR027417 -
Ssu5g0718 743 Pfam ABC transporter 589 634 IPR003439 GO:0005524
Ssu5g0718 743 SMART AAA_5 8 157 IPR003593 -
Ssu5g0718 743 SMART AAA_5 597 713 IPR003593 -
Ssu5g0718 743 Pfam ABC transporter 64 103 IPR003439 GO:0005524
Ssu5g0718 743 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 251 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0718 743 Gene3D - 635 739 IPR027417 -
Ssu5g0718 743 Gene3D - 42 67 IPR027417 -
Ssu5g0718 743 Gene3D - 68 175 IPR027417 -
Ssu5g0718 743 Gene3D - 560 634 IPR027417 -
Ssu5g0718 743 Gene3D ABC transporter type 1, transmembrane domain 4 41 IPR036640 GO:0005524|GO:0016021
Ssu5g0718 743 Gene3D ABC transporter type 1, transmembrane domain 224 558 IPR036640 GO:0005524|GO:0016021
Ssu5g0718 743 MobiDBLite consensus disorder prediction 191 224 - -
Ssu5g0718 743 Pfam ABC transporter transmembrane region 252 523 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0718 743 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 633 740 - -
Ssu5g0718 743 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 4 68 - -
Ssu5g0718 743 SUPERFAMILY ABC transporter transmembrane region 237 551 IPR036640 GO:0005524|GO:0016021
Ssu5g0718 743 ProSitePatterns ABC transporters family signature. 639 653 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0718 Ssu-Chr5 17890436 17895303 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0718 624 742 Calmodulin-binding Proteins AT2G36910 62.500 1.78e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0718 K05658 - gmx:100809752 1016.14