Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0716 ATGTCAGACCGAGGTCCATTTGCCGGCGTCTTGGCCGTGGAAACAaaggagagaaagaaggaagaaactACACAGCAGAAACGAAAGGTTCCTTTGCTCAAGCTCTTCTCCTTTGCAGACTTTTATGATTGTGTTTTGATGGCTGTTGGATCTGTTGGGGCATGTGTTCATGGTGCCTCTGTGCCTgttttctttatcttctttgGAAAGATGATCAATGTCATAGGCTTCGCTTACCTTTTTCCCAAAGAAGCTTCGCACGAAGTTGCCAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCATGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACCGAGGCATCAACTGGAGAGGTTATTTCTTCTATTACAAGTGACATCATCGTTGTTCAAGATGCGCTGTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGATTTATCGCGGGCTTTACCATTGGCTTTGTCAGAGTGTGGCAGATCAGTTTAGTGACACTTGCTATTGTACCCTTAATTGCCCTTGCTGGAGGTCTTTACGCATACGTGACCATTGGTCTTATTGGAAAAGTTCGAAAAGCATATGTGAGGGCTGGTGAAATCTCTGAAGAGAGTCCGAGAAAAGTGTACAGGAGGCTTGATCGCGTTATGGTGGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCGTTAGGAACGCTGATATGATCGCTGTTATTGAGGGAGGGAAGGTGGTGGAAATTGGCAATCATGAGGAACTCATTTCCAACCCAAATAAGTGTATGCATCTCTTGTCAAATCCAAGAAACAGCCTCTTCTCAAGGCCAGTTTCTGTGGATCCTTACTTGGGAGGGTCATCAAGGTACTTGGAGGGAGAGTCATCATCCCGTGCAACAAGCTTTCGTGGTAGTTTCCGTTCAGATAAAGAATCAACTAGCCGTGCTTTTGGTGATGGAGCAGAAAATGTTGGAAGTTCAAGGCATGTCTCAGCAAGAAGACTGTATTCCATGATTGGTCCTGACTGGCTTTATGGTGTTTTTGGAACCTTGGGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTCGTAGCTTATTACATGGACTGGGATACAACACGtcatgaagtgaaaaaaattgcTTTCCTCTTTTGTGGGGCAGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGGGCGAGAGAAAAATGTTTTCCGAATGTTGGTCTGGTAGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATAACGCTTGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACCTCAGCAAAGCGTATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTAAGTAATATCCGTACTGGTGGCTGCATTTTGTGCTGA 1599 0.4309 MSDRGPFAGVLAVETKERKKEETTQQKRKVPLLKLFSFADFYDCVLMAVGSVGACVHGASVPVFFIFFGKMINVIGFAYLFPKEASHEVAKYALDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIVVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRKAYVRAGEISEESPRKVYRRLDRVMVGRTTVIVAHRLSTVRNADMIAVIEGGKVVEIGNHEELISNPNKCMHLLSNPRNSLFSRPVSVDPYLGGSSRYLEGESSSRATSFRGSFRSDKESTSRAFGDGAENVGSSRHVSARRLYSMIGPDWLYGVFGTLGAFIAGAQMPLFALGISHALVAYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKCFPNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTGGCILC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0716 532 SUPERFAMILY ABC transporter transmembrane region 364 526 IPR036640 GO:0005524|GO:0016021
Ssu5g0716 532 Gene3D ABC transporter type 1, transmembrane domain 459 526 IPR036640 GO:0005524|GO:0016021
Ssu5g0716 532 Gene3D ABC transporter type 1, transmembrane domain 20 235 IPR036640 GO:0005524|GO:0016021
Ssu5g0716 532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 235 457 IPR039421 -
Ssu5g0716 532 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 236 - -
Ssu5g0716 532 Gene3D - 236 332 IPR027417 -
Ssu5g0716 532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 236 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0716 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 296 IPR027417 -
Ssu5g0716 532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 457 526 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0716 532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 236 IPR039421 -
Ssu5g0716 532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 459 527 IPR039421 -
Ssu5g0716 532 Gene3D ABC transporter type 1, transmembrane domain 333 458 IPR036640 GO:0005524|GO:0016021
Ssu5g0716 532 MobiDBLite consensus disorder prediction 331 351 - -
Ssu5g0716 532 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 236 - -
Ssu5g0716 532 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 459 527 - -
Ssu5g0716 532 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 235 457 - -
Ssu5g0716 532 Pfam ABC transporter transmembrane region 457 526 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0716 532 Pfam ABC transporter transmembrane region 52 235 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu5g0716 532 SUPERFAMILY ABC transporter transmembrane region 35 236 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0716 Ssu-Chr5 17750801 17780779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0716 125 526 Calmodulin-binding Proteins AT2G36910 27.178 9.93e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0716 K05658 - gmx:100809752 397.127