Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0713 ATGGACGGTGAGCGGAGCATGCCTGCTCCATCTCATGGGCGTGTTGATGGTGCTCAGAAAGTTAGAGCATTACATggGAGGACTACTGGCCCAACAAGGCGTTCTACAAAAGGGCAATGGACACCGGAGGAGGATGATATCTTACAGAAGGCTGTTCAgagatttaaaggaaaaaattggaaaaaaattgCTGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGCCCATGGTCTAAAGAGGAAgatgaaataattattgaattggtGAGGCAAAATGGGCCTAAAAAGTGGTCATCTATTGCACAACATTTACCTGGACGCATTGGTAAACAATGTCGAGAAAGGTGGTGTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAAGAAGAGGAGTTGGCTCTAATACATTTTCATCGGATTTATGGGAACAAATGGGCTGAATTGTCAAAGGTCATTCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGGCATCAGGCTTGCTTACTCAGTTTGAATCTGTACCTCATGTTGGATATTCGAATCAACCAACAAGGGTGCAGTGTAGTGGAGATGATAACAGTCCCAAGGGGACTGAAGGAGAGGAAGTTTCAGAGTGTAGCCAAGGTTCAGCTAATGCTGTCCGCTTTCCATCTGCTAGAGGGACGAGCAGTGCTGACTTACAAACTGGAGATGCATATcggccaaatgaagaatgtagTCTTGGAAAGGATAATAGTCAGAGTCAAGCATCTTGTTCGGAGCTGTATTATGTATCAATTGATGATGTTACTATGTGCATCCCAGAAATTGCTCACCAAGAGGCTTGCGCTTCTCAATTCATTGAGCAACAGTCACATGAACCTGGAAATTCCATTAGTGGGGATTGCCAGTTCAATTTACATTCCTTACCCaatatttcatcaatggtcttgGGGCAGGAATCCTCGCTGTTGCAAAGAGAATGTATAGCTCCTAGTGAAATCTGTGACATGGTTAATGTTCCATTTCGGACTTCAGTGGAGTTAGGTGTTTCAACGTCCATGGGACCTGTATCTATGGACTCTCTTAAACCAGAGCACATGTTGATATCTGATGATGAATGTTGCAGAGTCCTGTTTTCAGATGCAATGAATGATGGATGTTTTTCCCCTGTAGATTATAATAAAGGTGAAGATATGGTTGAATTTTCTGGATGCACTTCATTTCTTTGTCAATCATGCAATATCCAGATATCTGAAACTGGTGGAACCTCAACTCCACAGCTAACTTGTCCTCAGTGTTCTAATAATTATAGAGGAACTTCATCCTCCCAATCTGTCCCTCTGGTACTTTCTGCTAGTGATGATAGGCTGATGCCTACTGCCAACGGCAATGAATTATTTGGGACTGAAGATCACCATTTTGCCTCCAGAGCACCTGCTAACTTCACTTATGTCAATGACATATCCAGTTCTCCTTGTGTTGATGATATAGGTAGTGCAGTAATGCAAGAACCACATTATATTCTGAAGGGTACTTCAAAATTGGTCCCTGTAACTAGTTTTGGCTGTGGATCAGATGCCAAGCAAACTTGTAATCAAACAGATGAAAAAACAAATGTGCATACAGAAAAGGAGGACTCAGGATCTCTCTGTTATGAACCTCCCCGTTTTCCTAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTGTGCAATCTGGGAGTGATTTGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTTACTCCTTTCAGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATCTTAAAGAAACGACACCGAGATTTGTTGTCACCACTCTCAGATAAAAGAATTGGTAAGAAACTTGAGACTGACATGACATCTACCATtaccagaaaattttcaagttcGGATGTCATGTTTGGTGACAATGAGACTCGAGAAGCAGATATGCCTTCGTCTTCATCTTCATTGCAAAAACCGAACACCAGTGCATCtgttgatgatgataataaagaaaattgtggACAAGCTTATAAAGGGGAACAAGTAGAGGAGCCAATTAAAACCGcaattttggatgaaaagaaCTCTCAAAAAGATACTGTTGACAGTAATTCTCAGCATAGTGTCAAGCAACGACCTCTTAATTCTAAAATGAAGATTGATGCCACAGCTGCTGAGATTGAGCAACAACCTTCTGGAGTGTTGGTTGAACATGATGTGAATGACCTGTCACTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAGACAGAGGTCTGGGTTCAAGTTCTAAAACTCCCAAAAGCTTGAACAGTTCCTTGAAAGCAGCTCCAAATCGGAGTGGCCATTTGAAATTATCTTCTGAAAATCCATGCTCAAGGGTTAACTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAGACTTTCAGTAGCTGTTCCTCGTGTACAAGCTCCAGGGGACTATTCAGGGGATCAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCAtATTTGGTGGAACACCATTTAGGAAAAGCATTGAATCACCTTCTGCATGGAAATCTCCTTGGTTCTTCAATACTTTTCTATCTAGCCCCAGACTTGATACTGAAATGACAATCGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTGAAACAGATCAGTGAACAAACTGCTGCCACATACGCCAATGCTCAGGAGATTTTGGGAAATGAAACTCCTAAAGCATTACCGAAAGATGCATCTGGAAACGACAAGGATAGGGACCAAGAAAATAATGATCCTTCCAATCAGCCTGGGAACCATTCTCAGTTGGCTTCAAATGCTTTGATAGAGCGACGCACGCTTGACTTTAGTGAATGTGGAACACCAGGCAAGGGTGATAACAACAAATCTTCAGCTATGACTAAGAGCTTCTCAAGCCCTTCTTCGTATTTGTTGAAAGGTTGTAGATGA 3144 0.3995 MDGERSMPAPSHGRVDGAQKVRALHGRTTGPTRRSTKGQWTPEEDDILQKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVRQNGPKKWSSIAQHLPGRIGKQCRERWCNHLDPTIKKEAWTQEEELALIHFHRIYGNKWAELSKVIPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFESVPHVGYSNQPTRVQCSGDDNSPKGTEGEEVSECSQGSANAVRFPSARGTSSADLQTGDAYRPNEECSLGKDNSQSQASCSELYYVSIDDVTMCIPEIAHQEACASQFIEQQSHEPGNSISGDCQFNLHSLPNISSMVLGQESSLLQRECIAPSEICDMVNVPFRTSVELGVSTSMGPVSMDSLKPEHMLISDDECCRVLFSDAMNDGCFSPVDYNKGEDMVEFSGCTSFLCQSCNIQISETGGTSTPQLTCPQCSNNYRGTSSSQSVPLVLSASDDRLMPTANGNELFGTEDHHFASRAPANFTYVNDISSSPCVDDIGSAVMQEPHYILKGTSKLVPVTSFGCGSDAKQTCNQTDEKTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDLQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIGKKLETDMTSTITRKFSSSDVMFGDNETREADMPSSSSSLQKPNTSASVDDDNKENCGQAYKGEQVEEPIKTAILDEKNSQKDTVDSNSQHSVKQRPLNSKMKIDATAAEIEQQPSGVLVEHDVNDLSLSSPDQVGLKSDRGLGSSSKTPKSLNSSLKAAPNRSGHLKLSSENPCSRVNSPCVRAKEHERLSVAVPRVQAPGDYSGDQTRKDGGFETCSIFGGTPFRKSIESPSAWKSPWFFNTFLSSPRLDTEMTIEDFGYLMSPGDRSYDAIGLLKQISEQTAATYANAQEILGNETPKALPKDASGNDKDRDQENNDPSNQPGNHSQLASNALIERRTLDFSECGTPGKGDNNKSSAMTKSFSSPSSYLLKGCR 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 213 261 - -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 1 42 - -
Ssu5g0713 1047 PANTHER TRANSCRIPTION REPRESSOR MYB5 4 1046 - -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 799 847 - -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 1021 1041 - -
Ssu5g0713 1047 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 213 277 - -
Ssu5g0713 1047 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Ssu5g0713 1047 CDD SANT 143 183 IPR001005 -
Ssu5g0713 1047 Gene3D - 36 88 - -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 739 754 - -
Ssu5g0713 1047 SMART sant 140 188 IPR001005 -
Ssu5g0713 1047 SMART sant 88 137 IPR001005 -
Ssu5g0713 1047 SMART sant 36 85 IPR001005 -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 963 1047 - -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 690 770 - -
Ssu5g0713 1047 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 990 1006 - -
Ssu5g0713 1047 CDD SANT 40 83 IPR001005 -
Ssu5g0713 1047 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 975 989 - -
Ssu5g0713 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Ssu5g0713 1047 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Ssu5g0713 1047 MobiDBLite consensus disorder prediction 690 723 - -
Ssu5g0713 1047 Gene3D - 89 140 - -
Ssu5g0713 1047 PANTHER MYB PROTEIN-RELATED 4 1046 - -
Ssu5g0713 1047 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Ssu5g0713 1047 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Ssu5g0713 1047 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Ssu5g0713 1047 CDD SANT 91 135 IPR001005 -
Ssu5g0713 1047 Gene3D - 142 201 - -
Ssu5g0713 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Ssu5g0713 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0713 Ssu-Chr5 17560819 17585308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0713 4 1047 MYB Transcription Factor Family AT4G32730 43.271 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g0713 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0713 - K09420 gmx:100794559 1790.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0713 5 17560819 17585308 Ssu5g0713 5 17560819 17585308 ECH
Ssu5g0713 5 17560819 17585308 Ssu1g3307 1 85824553 85831491 PCT