Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0694 ATGCAAAAGGACAAGGAAGTTGTTAGCAAAGAGGGTAAGGATATTGAAATGGAAGGGACTCATCAGAAGGAGGAAACCCTACCACCGGGATTTCGGTTTCATCCCACCGATGAAGAACTCATCTCTTACTATCTTACAAACAAGATTTCAGATTCTAATTTTACAGGAAAAGCAATAGCTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCGGGGAAGGCCAAGATGGGGCAGAAAGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATACCCCACGGGTGTGAGAACCAACCGAGCAACAAACACGGGGTACTGGAAAACCACAGGGAAAGACAAGGAGATCTTCAACAGTGTTACATCGGAGTTGATTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGCAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAGTCCAGCTTCAGAACCAACAagCAGGATGAATGGGTGGTTTGCCGTGTATTCCGCAAGAGTGCTGGTGCAAAAAAGTTCCCCTCTTCCAACCACACCAGAGCAGTGAATCCTTATAGTCTGGAGGTTGGTCCTAGCATTGTGCCACCACCAATGATGCACCTGGGAGATCCTTCTGCTCATTTCCTATATGGAAGAAACTACATGATGAGCAGTGCAGAGGTAGCTGAAGTGACAAGGGTCTTGAGAGGTGGTGGATCCACCAGTGTGATGAATCTACCAATAATGCAGCACCATTTGAGCAACCCAGTAgcaggaggaggaggaggaggatttACCATTTCTGGCCTTAATTTGAATCTGGGAGGAGGAACAGTTGCTACCACCACACAACCACAACCCCTTTTGAGGCCAATaatgccaccaccaccacagcCATCTCCTGCTCACACAATGGCCCAACTGCATGACTTCTGTTCCAACATGGTGACTCCCAGTGCTCTTGCTGCAGATAATGTAGGGTATGGTGCAGACATGAGCAGTGCAAATTCTCATGGCAATAGGTACATGGGCATGGACCATTGCATGGATCTGGACAATTACTGGCCTTCCTACTAA 1086 0.4457 MQKDKEVVSKEGKDIEMEGTHQKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELIGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRTNKQDEWVVCRVFRKSAGAKKFPSSNHTRAVNPYSLEVGPSIVPPPMMHLGDPSAHFLYGRNYMMSSAEVAEVTRVLRGGGSTSVMNLPIMQHHLSNPVAGGGGGGFTISGLNLNLGGGTVATTTQPQPLLRPIMPPPPQPSPAHTMAQLHDFCSNMVTPSALAADNVGYGADMSSANSHGNRYMGMDHCMDLDNYWPSY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0694 361 SUPERFAMILY NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Ssu5g0694 361 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Ssu5g0694 361 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Ssu5g0694 361 MobiDBLite consensus disorder prediction 1 31 - -
Ssu5g0694 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 358 - -
Ssu5g0694 361 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Ssu5g0694 361 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0694 Ssu-Chr5 16686372 16689813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0694 18 361 NAC Transcription Factor Family AT2G24430 52.575 2.25e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g0694 NAM 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0694 - - gmx:100811175 616.69