Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0692 ATGGAGTCCAAGTGGGGCGGCGCCGGCGTTCTGGCGGCGGCGCACTTCGACGACTTGAAGTGGCTAGCGTCCATGTTCGATCCCGAAATAGCAAACGACGACGTCAAACCGTGCAAGCTCGATCCATTCACCGGCGCCTCCGGTCACCTCAACGACGCTTTCCAAAATCTGGATGCAGTAACTTCATTTTCAAATTGTGGTGGAGTAACAGATGATACCCTTGTCCGCTCCCAAAACCTCACTCCCATGCAATCAACCATCTCTGCAACTATTGATTCTCAGTCATCCATTTGTGGTACCGTTGGGAGCCCAGTGTCCGCTTACAAGCCAAACGGCAGAGATAATCAAGTCAAAGGGGCCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATATGAAGCGCCTTAGAAgGAAGGTTTCTAATCGGGAGTCTGCAAGGAGGTCCAGAAGAAGAAAGCAAGCCCATTTGGCTGACCTGGAGTGGCAAGTTGAACGGATGAGACTGGAAAATGCTAACCTGTTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAGGCTGATACGAATAACCGAGTGCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTCGGGGCTCACTCACCCCTTTTAACAACCAGCTTCTTCAAAATCAGAGTCAATTAAGCACCCCACCACAACTCAACACGAATAATCTGCGCCGCATGGCACATGTCTCGCCAACCATCACCGTCCACGGGAATGATGCTTCATATGGTAGTGGAATCACAGTTGATGGACAGAATTCAGCTCTTGGGCTTGGAAACCTGGATATACCTTGCAGCGATTTCAGTAGTGGGGTCAATAGCGATAATGCTGTGAGCTCTTTGACTAGCATGTGGTCTTAA 963 0.4912 MESKWGGAGVLAAAHFDDLKWLASMFDPEIANDDVKPCKLDPFTGASGHLNDAFQNLDAVTSFSNCGGVTDDTLVRSQNLTPMQSTISATIDSQSSICGTVGSPVSAYKPNGRDNQVKGATTSGSSREPSDEDDEAGPCEQSTNAIDMKRLRRKVSNRESARRSRRRKQAHLADLEWQVERMRLENANLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMVTRGSLTPFNNQLLQNQSQLSTPPQLNTNNLRRMAHVSPTITVHGNDASYGSGITVDGQNSALGLGNLDIPCSDFSSGVNSDNAVSSLTSMWS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0692 320 Gene3D - 148 205 - -
Ssu5g0692 320 MobiDBLite consensus disorder prediction 102 146 - -
Ssu5g0692 320 SUPERFAMILY Leucine zipper domain 149 199 IPR046347 GO:0003700|GO:0006355
Ssu5g0692 320 PANTHER BASIC LEUCINE ZIPPER 9 50 320 - -
Ssu5g0692 320 SMART brlzneu 145 209 IPR004827 GO:0003700|GO:0006355
Ssu5g0692 320 Pfam bZIP transcription factor 148 196 IPR004827 GO:0003700|GO:0006355
Ssu5g0692 320 PANTHER BASIC LEUCINE ZIPPER 63 50 320 - -
Ssu5g0692 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 147 210 IPR004827 GO:0003700|GO:0006355
Ssu5g0692 320 Coils Coil 165 199 - -
Ssu5g0692 320 Coils Coil 207 227 - -
Ssu5g0692 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 152 167 IPR004827 GO:0003700|GO:0006355
Ssu5g0692 320 CDD bZIP_plant_GBF1 150 201 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0692 Ssu-Chr5 16566216 16572937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0692 72 319 bZIP Transcription Factor Family AT5G24800 50.000 2.49e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g0692 bZIP_1 7.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0692 K25784 - gmx:100776831 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3335 1 86384072 86390087 Ssu5g0692 5 16566216 16572937 PCT