Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0688 ATGTCTATGGATCTAAAGAAATCTAACAAGATCAGAGAAATTGTTAGACTTCAACAGATCCTCAAGAAATGGAGAAGGCTAGCCAACTCTTCAAAAATCACCACCACTAGCAAGAGCATGAAGTTTCTGAAGAGAACACTTTCTCTATCTGAACGTGAAGGAGGGTCAAGCAATGTCGTTCCCAAAGGCTACCTAGCTGTTTGTGTTGGTGAAGAGCTTAAGAGGTTCACTATACCAACTGAATATTTGGGTCACCAAGCCTTTCAGATTCTCCTGAGAGAAGCAGAAGAAGAATTTGGGTTTCAACAAACGGGTGTTCTGAGGATTCCTTGTGAAGTGGCTGTTTTTGAGAGTATCTTGAAGATGGTGGAAGGAAGGGAGGACAAGATTTCCTCCCAAGAATGCAGACTCAGCATTGAAGAAATGATGGGGTACTGCTCAGAAAACCAACTTGCTTATTCTCACCATCCTCAAAGTCCATTGTGCAGATAG 492 0.4228 MSMDLKKSNKIREIVRLQQILKKWRRLANSSKITTTSKSMKFLKRTLSLSEREGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFESILKMVEGREDKISSQECRLSIEEMMGYCSENQLAYSHHPQSPLCR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0688 163 Pfam Auxin responsive protein 22 123 IPR003676 GO:0009733
Ssu5g0688 163 PANTHER SAUR FAMILY PROTEIN 7 163 - -
Ssu5g0688 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 163 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0688 Ssu-Chr5 16387916 16388407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0688 3 163 Calmodulin-binding Proteins AT4G31320 51.546 1.00e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0688 K14488 - gmx:100799598 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3340 1 86456251 86456760 Ssu5g0688 5 16387916 16388407 PCT