Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0679 ATGAGGAAAGTTTGGCTTATTGTCCTAGTCATATTCTACGGTGGCTTTCCCTCAAAAGGGTTCAGCAATGTTTCTACAAGACCAAGACCAAGTGCCGTTAACATTGGGGCAATTTTATCTTTCAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATATAAATTCTAATGCAACGATTCTCAATGGAACTAAGCTTAATATCTCAATGCTGGACACCGAATCATCCACTGGATTCCAAGGAATCATTGCTTGTTTAGCTTTTCAACCCTATTTTTTGCCCATAATTAAGTCTTACATCTCAGAAAACCCCTTCTATGCAGGAGAGAAAACTGTCAGCACCCTTGGTCGTTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCTTGACCTCCATCCTAACCGTGGAACAGCTCTCATCCCCAGTTAAAGGAATTGAAAGCTTAGTAACAAGCAACGACCGCCTAGGTTTCCTGAGGGGTTCATCTGCTGAAAATTATTTGACTGAGGGGCTCAACATACCCAGGTCCAAGCTTGTTCCTCTCAATTCCACATCAGAATATGAAAAAGCCTTGAAGGATGGGTCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAACGTGTATACATGGAACTCTTCCTAGCGACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTCACCCATATGGGATGGGGTTTTGTTAGGTATGAACTTGAGAGTGTCATTACCCCTCAAAAGTTTCATGGTCCTTTGTCTGCCTATTTAGAAAAGGTTCATAGAGCTTTACATGATTTCaatgaattgttgttgAGAATAGCAGCCCCAATTTTACTAGGTAGCGTTTTGGACTCTGGTCAAGAAGTCAAGACTGCCAAGAGTTGCCACTTACGTGATCATTACGCAAGTTTAAACTgcaaactattttattatatcatagcTACTCATCTCACTTCTAGCCGCAAAAGAATCATCCTTGAGAAGGATGCACGTTAA 1041 0.4015 MRKVWLIVLVIFYGGFPSKGFSNVSTRPRPSAVNIGAILSFNSTIGRVAKVAIQAAVDDINSNATILNGTKLNISMLDTESSTGFQGIIACLAFQPYFLPIIKSYISENPFYAGEKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSNDRLGFLRGSSAENYLTEGLNIPRSKLVPLNSTSEYEKALKDGSASGGVAAIIDERVYMELFLATRCEFGIVGQEFTHMGWGFVRYELESVITPQKFHGPLSAYLEKVHRALHDFNELLLRIAAPILLGSVLDSGQEVKTAKSCHLRDHYASLNCKLFYYIIATHLTSSRKRIILEKDAR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0679 346 Pfam Ligand-gated ion channel 115 251 IPR001320 GO:0015276|GO:0016020
Ssu5g0679 346 Gene3D - 30 97 - -
Ssu5g0679 346 Gene3D - 99 182 - -
Ssu5g0679 346 SUPERFAMILY Periplasmic binding protein-like I 30 83 IPR028082 -
Ssu5g0679 346 SMART GluR_14 65 287 IPR001320 GO:0015276|GO:0016020
Ssu5g0679 346 PANTHER GLUTAMATE RECEPTOR 110 251 - -
Ssu5g0679 346 PANTHER GLUTAMATE RECEPTOR 19 94 - -
Ssu5g0679 346 SUPERFAMILY Periplasmic binding protein-like II 139 250 - -
Ssu5g0679 346 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 110 251 - -
Ssu5g0679 346 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0679 Ssu-Chr5 16182008 16195143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0679 5 94 Ion Channels AT3G51480 42.222 6.45e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0679 K05387 - gmx:100789442 232.646