Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0678 ATGCTCTTTGTGTTGGCTATTTGTTTTGTGCCATCATTGGGAGACAcaaatgctcaaattttgatGAGGCTCAAAAGTTCTTTGTCCAATGACAGTGCCTTAAACAACTGGGGAAACGAGTCTAATTTATGCAAATGGGCTGGTTTGTTGTGCCGCCGTGACCAAACATTTTATGGCTTGAGACTAGAGAATATGACACTAGGTGGGAAGGTTGATGTAGAAACCTTACTGGAATTGCCAACTTTGACAAGCTTTAGTGTCATTAACAATACATTTGAGGGTCCAATGCCTGAGTTCAAAAGGCTTGTGAGGTTAAGGGCATTATTCCTGTCCAAAAACAAGTTCTCTGGTGAAATTCCGGATGATGCTTTTGAGGGCATGAGAAATCTGAAAAGGGTATTCTTGGCGGAAAATGGGTTTACGGGTCGTATTCCTAAGTCATTGGCTAACTTGCCTAGACTCTTGGATTTGGACTTACGTGGGAATAGTTTTGGAGGCAACATACCAGAGTTTCAACAAAAGGATTTCAGAGTGTTTAATTTGTCGTATAACCAATTCGAGGGTCCAATACCAGAAAGCTTAAACAACAAGGATCCAAGTTCATTTGCTGGCAACAAAGGCCTATGTGGAAAACCTATAAGCCCCTGCAACGAGATTGGCCTGCTCCCCAACCCCAACTACTCTAGATCAGTGATTCCTAACCCTGCTTCTCCACCTCAAGGAAAGGGAAAGAAACACAGAATCCTTATAACTGTCATtgtagtggtggcagtggttGTCTTTGCTTCAATAGTAGCACTTCTATTTATCCACACCCACAAGAGGAAAATCTTGCAACCCATAAAATTAGGCAAGCAGACACATTCCAAGAACAATGCAGGCTTAAAGGAGTCTCAATCCATTGATCTGACAAGTGATTTCAAGAAGGGTGATGGTGGAGAATTGAACTTTGTTAGGGAAGACAGAGGGGGGTTTGATTTGCAAGACCTGCTTAGAGCCACAGCTGTGGTTCTTGGCAGTGGCAGTTTCGGGTCCACCTACAAGGCCATGATTTTGAATGGACCAGCTGTGGTTTTGAAGAGGTTTAGGCACATGAACAATGTTGGGAAACGGGAGTTCTTTGAGCACATGAAAAGGCTTGGAAGTTTGACACACCCTAATCTTCTCCCTCTTGCTGCATTCTACTACATAAAAGAAGAGAAGTTTTTGGTTTATGACTTTGGTGAAAATGGAAGCTTGGCCAGTCATCTACATGGTAGAAATGGCTCTGTGCTAACCTGGTCAACCCgtttgaaaatcataaaaggaGTGGCCAGGGGCCTAGCCTATCTCTATGAAAACTTCCCTGGACAGAACCTACCACATGGCCATCTCAAGTCCTCCAATGTGGTGCTGGACCATTCATTTGAGCCACAATTGACAGAGTATGGCCTTGTGCCAGTGATGAACAAGAGCCATGCTCAGCAGTTCATGGCAGCCTACAAGGCCCCAGAGGTGAGACAATCTGGCAGGCCAAATGAGAAGAGTGATGTCTGGTGTCTGGGGATCCTCATTCTGGAGTTGCTGACAGGGAAGCTCCCAGCAAACTATCTGAGACATGGGAAGGGGGGGAATAATGCTGACTTGGCAACATGGGTGGACTCAGTTGTGAGGGAAGAGTGGACTGGTGAGGTGTTTGATAAGGACATCATGGGGACTAGGAATGGGGAGGGTGAGATGCTGAAGCTGCTGAGGATTGGGCTGTATTGCTGCAAATGGGGTATGGAGAGTAGGTGGGATTGGAGGGAGGCAGTGGCAAAGATTGAGGAGTTAAAGGAGAGGGATAGTGAGGATGAGTACTCTTCTTATGTGAGTGAAGTGGATTTGTATTCAAGGACTATGACTGAAGATGAGTTCTCTTTCTCTATCACTAATTGA 1917 0.4392 MLFVLAICFVPSLGDTNAQILMRLKSSLSNDSALNNWGNESNLCKWAGLLCRRDQTFYGLRLENMTLGGKVDVETLLELPTLTSFSVINNTFEGPMPEFKRLVRLRALFLSKNKFSGEIPDDAFEGMRNLKRVFLAENGFTGRIPKSLANLPRLLDLDLRGNSFGGNIPEFQQKDFRVFNLSYNQFEGPIPESLNNKDPSSFAGNKGLCGKPISPCNEIGLLPNPNYSRSVIPNPASPPQGKGKKHRILITVIVVVAVVVFASIVALLFIHTHKRKILQPIKLGKQTHSKNNAGLKESQSIDLTSDFKKGDGGELNFVREDRGGFDLQDLLRATAVVLGSGSFGSTYKAMILNGPAVVLKRFRHMNNVGKREFFEHMKRLGSLTHPNLLPLAAFYYIKEEKFLVYDFGENGSLASHLHGRNGSVLTWSTRLKIIKGVARGLAYLYENFPGQNLPHGHLKSSNVVLDHSFEPQLTEYGLVPVMNKSHAQQFMAAYKAPEVRQSGRPNEKSDVWCLGILILELLTGKLPANYLRHGKGGNNADLATWVDSVVREEWTGEVFDKDIMGTRNGEGEMLKLLRIGLYCCKWGMESRWDWREAVAKIEELKERDSEDEYSSYVSEVDLYSRTMTEDEFSFSITN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0678 638 SUPERFAMILY L domain-like 37 196 - -
Ssu5g0678 638 Gene3D Ribonuclease Inhibitor 14 174 IPR032675 -
Ssu5g0678 638 SUPERFAMILY Protein kinase-like (PK-like) 337 606 IPR011009 -
Ssu5g0678 638 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Ssu5g0678 638 Pfam Protein kinase domain 337 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0678 638 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Ssu5g0678 638 Gene3D Transferase(Phosphotransferase) domain 1 409 625 - -
Ssu5g0678 638 PANTHER LRR RECEPTOR-LIKE KINASE 4 614 - -
Ssu5g0678 638 Pfam Leucine rich repeat N-terminal domain 18 51 IPR013210 -
Ssu5g0678 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 614 - -
Ssu5g0678 638 Gene3D Phosphorylase Kinase; domain 1 299 407 - -
Ssu5g0678 638 ProSiteProfiles Protein kinase domain profile. 332 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0678 638 Gene3D Ribonuclease Inhibitor 177 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0678 Ssu-Chr5 16162463 16165680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0678 2 634 Receptor kinase-like Gene Family AT4G31250 45.428 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu5g0678 Pkinase 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0678 - - gmx:100781593 1040.02