Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0673 ATGTCTCGCGTGTACGTTGGTAACTTGGATTCACGAGTCACCGAGAGAGATCTCGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCGCAGGATGCTATACGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGTGGTCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGGGAATGTCGCTTGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCCCGATTCCGTAGGAGCCCAAGTTATGGACGAAGGAGTTACAGTCCTCGTGGGCGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGGCGTGAGGAGGTTCCGTATGCTAATGGAAATGGCCTTAGGGAACGACGCAGAAGCAGAAGTTGA 534 0.5225 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0673 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Ssu5g0673 177 SUPERFAMILY Retrovirus zinc finger-like domains 81 104 IPR036875 GO:0003676|GO:0008270
Ssu5g0673 177 Gene3D - 1 73 IPR012677 -
Ssu5g0673 177 SMART rrm1_1 3 69 IPR000504 GO:0003723
Ssu5g0673 177 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 169 - -
Ssu5g0673 177 Gene3D - 83 141 - -
Ssu5g0673 177 MobiDBLite consensus disorder prediction 101 177 - -
Ssu5g0673 177 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Ssu5g0673 177 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 169 - -
Ssu5g0673 177 MobiDBLite consensus disorder prediction 66 87 - -
Ssu5g0673 177 CDD RRM_SRSF3_like 3 71 - -
Ssu5g0673 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Ssu5g0673 177 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Ssu5g0673 177 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Ssu5g0673 177 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0673 Ssu-Chr5 15991146 15993961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0673 4 84 Eukaryotic Initiation Factors Gene Family AT1G71770 34.483 4.04e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0673 5 15991146 15993961 Ssu5g0673 5 15991146 15993961 ECH