Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0670 ATGGCCGTGGAACTCATGGGGTTCCCAAAACTGGACGAGCAAAAGGCCATCCAGGAGGCCGCATCGGAAGGCCTCAAGGGCATGGAGCACCTGATCCGCGCCCTCTCCCACCAACCAACACACTTAAACACCGACCTCGCCGACGTCACCGTCTCCAGGTTCAAAAAACTCATCTCCCTCCTCAACCGAACCGGCCACGCCCGGTTCAGGCGCGCCCCGGTCCACTTTCCCCCTCCGGCTCACCCGCCCCAGCCTGCGGCGCAGTTCGCGGCGCCGGCGCCGGTCGCCGTGCACCACGCGCCGGCGAGCGTGACGCTGGACTTCACGAAGCCCCACCACAGCGCGGTGCTGGGCTCCGGCGCGAACGCCGTGGAGCTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGTGACGGCAGCGTCTCCAACGGGAAGCAGGGACCGGCGATCTTCCTCCCGCCGGCCAACTCCGCCGGAAAGCCTCCGCCGCCCAAGAAACGCTGCCACGAACACTCCGACGACGTCTCCGGCTCCAGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTTCAAAGATCGCCGATATACCGCCGGACGAGTACTCGTGGCGGAAGTACGGTCAGAAACCGATCAAGGGGTCGCCGTACCCACGGGGTTATTATAAGTGCAGCACGGTGAGAGGGTGTCCAGCGAGGAAACACGTGGAACGCGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGTGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGGGTGGTGGGTTTGGTGTTCGAGTCAACGTAG 897 0.6366 MAVELMGFPKLDEQKAIQEAASEGLKGMEHLIRALSHQPTHLNTDLADVTVSRFKKLISLLNRTGHARFRRAPVHFPPPAHPPQPAAQFAAPAPVAVHHAPASVTLDFTKPHHSAVLGSGANAVELEFSKETFSVSSNSSFMSSAITGDGSVSNGKQGPAIFLPPANSAGKPPPPKKRCHEHSDDVSGSSKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHVVQAAMQENAAGVVGLVFEST 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0670 298 PANTHER WRKY PROTEIN 12 296 - -
Ssu5g0670 298 SMART WRKY_cls 219 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0670 298 Pfam Plant zinc cluster domain 176 217 IPR018872 -
Ssu5g0670 298 ProSiteProfiles WRKY domain profile. 214 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g0670 298 Gene3D WRKY domain 203 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0670 298 SUPERFAMILY WRKY DNA-binding domain 217 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g0670 298 MobiDBLite consensus disorder prediction 149 192 - -
Ssu5g0670 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 296 IPR044810 GO:0003700
Ssu5g0670 298 MobiDBLite consensus disorder prediction 174 192 - -
Ssu5g0670 298 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0670 Ssu-Chr5 15835142 15837571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0670 1 297 WRKY Transcription Factor Family AT2G24570 61.890 5.81e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g0670 WRKY 9.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0670 - - gmx:100127381 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0670 5 15835142 15837571 Ssu5g0670 5 15835142 15837571 ECH
Ssu4g3147 4 79708656 79710043 Ssu5g0670 5 15835142 15837571 ECH