LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0669	ATGGAAGCTTCTAGAAGCTCCGATTCTAGAATAGAGAACTTGATTAGCGCCAAGAAATCCTTGAAGCTTAGCTTAGAGAAATCAAAATCGGTAGGTTTAGCGTTGCAGAAAGCGGGGCCAAGGTTAGACGAAATCAGGCAGAGGCTGCCGTCGCTCGGATCGGCGGTCCGGCCGATTCGCGCCGACAGGGACGCCCTCGCGGCGGTCGGCGGCCACATCAACCGCGCCGTCGGCCCCGCCGCTGCGGTGCTCAAGGTTTTCGACGCCGTCCACGGCCTCGAAAAATCGCTCCTCTCGGACCCCCGGACCGACCTAGCCGGTTACCTGTCGGTGCTGAAGCGCCTGCAGGAGGCGCTGAGGTTCTTGGGGGACAACTGTGGGTTGGCAATTCAGTGGCTGGAGGATATTGTTGAGTATTTGGAGGATAACTCTGTTGCCGATCAAGTTTATCTCGCGAATTTGAAGAAGGAGTTGAAGAATCTTCGCGAGTTGCAGCATGGTGAGCTTGATGGTGGACTGTTGGATGCTGCATTGTTTAAGTTGGAGGACGAATTTAGGCGGTTGTTGACTGAGAACAGTGTGCCGTTGCCTATGTCGGCCACACCGGCAGGGTGCGGCGATCAGGCGTGCATTGCGCCGTCGCCGTTGCCGGTGTCGGTTGTTCACAAGCTGCAGGCGATTCTCGGGAGGCTGATTGCCAATGACAGGCTGGATAGGTGTGTGGGGATTTATGTTGAGGTGAGGAGTTCCAACGTGAGGGCGAGCTTGCAGGCGCTGAATTTGGATTACCTTGAGATTTCTGTGTCGGAGTTCAATGATGTGCAGAGCATTGAGGGGTACATAGCTCAGTGGGGGAGGCATTTGGAGTTCGCGGTGAAGCATTTGTTTGAGGCGGAGTATAAGCTTTGCAATGATGTGTTTGAAAGGATTGGGTTGGATGTGTGGATGGGTTGCTTTTCGAAGATTGCTGCGCAGGCCGGCATACTTGCGTTCCTTCAGTTTGGGAAGATGGTTACCGAGAGTAAGAAGGACCCCATTAAGCTTCTGAAGTTGTTGGACATTTTCGCGTCATTGAACAAGTTGAGACTGGATTTCAACCGGCTTTTCGGCGGCGCGCCGTGTGTTGAGATACAGAATTTGACGAGGGATCTTATCAAGAGGGTGATTGATGGGGCCGCGGAGATTTTCTGGGAGCTTCTGGTTCAGGTGGAGTTGCAGCGGCCGAATCCACCTCCTCAGGATGGCAGTGTGCCGAGATTGGTGAGCTTTATTACTGATTACTGTAACAAGCTCCTAGGAGAGGACTATAAACCAATATTGACCCAGGCACTGATCATTCACAGAAGTTGGAAGCGCCAAAGCTTTCAGGAGAGACTCCTTGTTAACGAGGTTTTGAACATAGTGAAGGCTGTTGAACTGAATGTGGAGACTTGGATCAAGGCTCATGAGGATCCTACGCTGTCCAACTTTTTTGCTATGAACAATCACTGGCATCTGTGCAAGCATTTGAAAGGGACAAAGCTTGGGGAGCTCTTGGGGGATTCTTGGTTGAGGGAGCATGAACAGTGTAAGGACTCTTACTCCACAAGCTTCTTGAGGGACAGCTGGGGAAAGCTTCCTGGACATTTGAGTAGGGAAGGGCTGATTCTTTTCTCGGGAGGGCGTGCCACTGCCCGCGACCTGGTCAAGAAAAGGTTGAAAAAGTTCAATGAAGTTTTCGATGAGATGTATACAAAGCAGTCAAGTTGGATCATGCCAGAACGAGATCTGAGGGAGAAGACATGTCAGCTTATAGTGCAAGCTGTGGTGCCTGTTTACCGCAGTTACATGCAGAATTATGGTCCTTTGGTTGAGCAAGACGCTAGCTCCACAAAATATGCAAAGTATACAGTGCAGAAGCTGGAGGAAATGCTCTTGTGTCTTTATCGGCCGAAGCCTGTAAGACATGGCAGCTTGAGAAGTCCAACATTTAGTGCAAAATATGGCAATGGAGTACCCGATCTTCGCAGAACAGCATCTGCAGTTGTTTTAGTTTCTCTTCTGAGATGGAAAACTGATTACTATCTACCTTGCACAGAGGTTTCTGCAAAAGCTATGCCATCTGTAAAACAATTTTGGGAGCAATTTAACCGTGTGAAACCAGAGGCCATTGTTGCTGCTGGCTGGTTTTTGGCCTCCGCCCCTGTAATTGTGGCTGTGTCAgctgcaatttctgcaatatcaAATATTGTGATGAAACTGCAACTgcaatcataa	2256	0.496	MEASRSSDSRIENLISAKKSLKLSLEKSKSVGLALQKAGPRLDEIRQRLPSLGSAVRPIRADRDALAAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRTDLAGYLSVLKRLQEALRFLGDNCGLAIQWLEDIVEYLEDNSVADQVYLANLKKELKNLRELQHGELDGGLLDAALFKLEDEFRRLLTENSVPLPMSATPAGCGDQACIAPSPLPVSVVHKLQAILGRLIANDRLDRCVGIYVEVRSSNVRASLQALNLDYLEISVSEFNDVQSIEGYIAQWGRHLEFAVKHLFEAEYKLCNDVFERIGLDVWMGCFSKIAAQAGILAFLQFGKMVTESKKDPIKLLKLLDIFASLNKLRLDFNRLFGGAPCVEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRPNPPPQDGSVPRLVSFITDYCNKLLGEDYKPILTQALIIHRSWKRQSFQERLLVNEVLNIVKAVELNVETWIKAHEDPTLSNFFAMNNHWHLCKHLKGTKLGELLGDSWLREHEQCKDSYSTSFLRDSWGKLPGHLSREGLILFSGGRATARDLVKKRLKKFNEVFDEMYTKQSSWIMPERDLREKTCQLIVQAVVPVYRSYMQNYGPLVEQDASSTKYAKYTVQKLEEMLLCLYRPKPVRHGSLRSPTFSAKYGNGVPDLRRTASAVVLVSLLRWKTDYYLPCTEVSAKAMPSVKQFWEQFNRVKPEAIVAAGWFLASAPVIVAVSAAISAISNIVMKLQLQS	751

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0669	751	Pfam	Exo70 exocyst complex subunit	283	638	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Ssu5g0669	751	Gene3D	Exocyst complex component Exo70	81	649	-	-
	Ssu5g0669	751	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	10	665	IPR004140	GO:0000145\|GO:0006887
	Ssu5g0669	751	PANTHER	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN	10	665	-	-
	Ssu5g0669	751	SUPERFAMILY	Cullin repeat-like	83	642	IPR016159	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0669	Ssu-Chr5	15781688	15785170	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0669	1	676	EXO70 exocyst subunit family	AT4G31540	73.256	0.0	1039

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0669	K07195		-	gmx:100796139	1207.2

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g0669	5	15781688	15785170	Ssu5g0669	5	15781688	15785170	ECH

Showing 1 to 1 of 1 entries