Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0665 ATGTCATTTTGTTGCAGATTTGAAAGTAATAAACAATCGATGGATGAGTATTCTAGTAAAAGAGGTGTGGATAGGGTGGTAGTCCCTAGAAAGGGGATGAGCCATGTATTTAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGCAGCCGATTGGGTTGCAGTAGTAGAGCCAATCTTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATTACAGTCCTCTTCACATAGCAAGGAAGCAATTGGAAGTTCCTCTAGAACTACTAGTAACCCAGGAAAACGACTTATAGAACCTCGGAAAACATTATCCTCTCAGTTTGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCACAATTTTCAGAGCTCATCCCTCCATCAGAAGAAATTCGGAGAGGGCCTCAAGCTGAAGGGGAAAGTACAGGGCCCAGTAATGCGATACTGATGGATGTAGGAAGCACTAGTGCTGTATCAAATACTAGATCTCCAAGGAATTTAAATCAAAGACCTGGATTGCGTGGGCAAGAAATTAAAAGCACTGGTCCAGTGAGACGTGCTGTTTCCAGCAGGCATGGGTTGAGGAACCACAGATGCAACTCTGTATCTGATGTCATCCCTGCTGGTTGTTCATCATCATATTCAACCCCTAATAGAAGgaaggatacaataaaaaagggaaactgTGAAGGGGGAAGTAGTAGTTCTACTGTTAGAGGGAAAAATATGACTGGGTCTTCAGTGGAAGGGCGGAATTCTGGCTCCAGAAATGGCATATCTATATCCGATTCAAGAAGATCTAGAAATATTCCTTCTCTCCGGAACACCAGCATGGCATCAGTAAGAACTCAAAGATCAATTAGTGGTCATGCCAGGGGAAGTTTTTCAAGCCAAGGAAACGAAAACCCTGTGGCAACCACTGAGTCCCCTGTTATGGTACCCCTTTCACCACATTCTGGTGATCTTAATGCTCCTGGCGTTTCATTTCATACTTCTACGGAGACTCCTTTAAGTCGTTCAAGCTCTTATGGAAGTTATGGTAGACCAGGCACTAGCAGTGAGCAGTTATGCAGTGTTATGCCTGTGTCTCCTGCAGAATATGACATCACTCATTCTCTAATAAATCAGGATAGCTTTCGACACTACAATATGGGTGGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGTAGAGCTAACCCATGAGCAAATTCTTTTGTTGGAGACCAACTTGTTCCTTAATGGACTAAACTTCTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTAACGGAGGAAGCACTTGCAGAATGTCTTAAAAAGAGTATATATCAGTCTGCACCTTCAGATGATGCAGATGAGAGTGGTAATGAGGAGAAGGATGATATCAAATGTTGCATTTGCCagGAGGAATATATTGTCGGAGATGAAATTGGGGGTCTGCAATGTGAGCATAGATTTCATGTGGTTTGCATACAGGAGTGGCTGCAGCTGAAGAACTGGTGCCCTATTTGTAAAGTATCAGCGGCACCGTCTCATTCATCTTCACCTCATTGA 1665 0.421 MSFCCRFESNKQSMDEYSSKRGVDRVVVPRKGMSHVFRDTANTRDRNGQICSRLGCSSRANLPKVAQVRSSEKGKSLRPSLQSSSHSKEAIGSSSRTTSNPGKRLIEPRKTLSSQFETDSSETSSVQDEPQFSELIPPSEEIRRGPQAEGESTGPSNAILMDVGSTSAVSNTRSPRNLNQRPGLRGQEIKSTGPVRRAVSSRHGLRNHRCNSVSDVIPAGCSSSYSTPNRRKDTIKKGNCEGGSSSSTVRGKNMTGSSVEGRNSGSRNGISISDSRRSRNIPSLRNTSMASVRTQRSISGHARGSFSSQGNENPVATTESPVMVPLSPHSGDLNAPGVSFHTSTETPLSRSSSYGSYGRPGTSSEQLCSVMPVSPAEYDITHSLINQDSFRHYNMGGIAEVLLALERIEQDVELTHEQILLLETNLFLNGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALAECLKKSIYQSAPSDDADESGNEEKDDIKCCICQEEYIVGDEIGGLQCEHRFHVVCIQEWLQLKNWCPICKVSAAPSHSSSPH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0665 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 547 IPR013083 -
Ssu5g0665 554 MobiDBLite consensus disorder prediction 336 366 - -
Ssu5g0665 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 14 546 IPR045191 GO:0061630
Ssu5g0665 554 MobiDBLite consensus disorder prediction 66 366 - -
Ssu5g0665 554 Pfam Ring finger domain 500 542 IPR001841 -
Ssu5g0665 554 ProSiteProfiles Zinc finger RING-type profile. 501 542 IPR001841 -
Ssu5g0665 554 MobiDBLite consensus disorder prediction 111 132 - -
Ssu5g0665 554 MobiDBLite consensus disorder prediction 239 324 - -
Ssu5g0665 554 Coils Coil 405 425 - -
Ssu5g0665 554 SUPERFAMILY RING/U-box 495 546 - -
Ssu5g0665 554 MobiDBLite consensus disorder prediction 150 186 - -
Ssu5g0665 554 MobiDBLite consensus disorder prediction 73 104 - -
Ssu5g0665 554 SMART ring_2 501 541 IPR001841 -
Ssu5g0665 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 14 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0665 Ssu-Chr5 15631453 15634714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0665 380 545 C3H Transcription Factor Family AT2G15530 42.169 4.31e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0665 - - gmx:100812055 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0665 5 15631453 15634714 Ssu5g0665 5 15631453 15634714 ECH
Ssu5g0665 5 15631453 15634714 Ssu1g3364 1 86858900 86871523 PCT