Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0659 ATGGCTATTGGTTCTCACAGGCTTTCTCAGCAGGGTGCCATTACAAAAAGAATGACAGCTATTGAGGAAATGGCAGGGATGGATGTCCTATGCAGTGACAAAACTGGGACTCTCACCTTGAATAAGTTGAGTGTTGACAGAAACTTGATTGAGGTGTTTGCTAAGGGTGTTGAGAAAGAGTATGTTATCCTTCTAGCAGCCAGAGCTTCTAGGACTGAAAATCAAGATGCCATAGATGCTGCAATTGTTGGAATGCTTGCTGACCCAAAAGAGGCACGTGCCGGTATTAGGGAGGTACATTTCCTTCCATTCAATCCTGTAGACAAGAGGACTGCACTGACATACATCGATTCTGATGGAAATTGGCATCGAGCTAGCAAAGGTGCTCCTGAGCAGATAATCAACCTTTGCAACTGCAAAGAGGATGTCAGAAAAAAGGTTCATGCAGTAATTGATAAGTTTGCTGAGCGTGGACTTCGGTCTTTAGGTGTTGCAAGACAGGAAATAcctgaaaaatcaaaagatagtCCTGGTGGACCATGGCAATTTGTTGGTCTGCTACCACTGTTTGATCCTCCCAGGCATGATAGTGCTGAAACCATTAGAAGAGCTCTTAACCTTGGTGTGAATGTTAAGATGATTACTGGGGATCAGCTTGCCATTGGAAAGGAAACGGGCCGGAGGCTTGGAATGGGAACAAATATGTACCCTTCATCTGCATTGCTTGGCCAAGACAAGGATGCTTCTATTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCAGGAGTATTTCCTGAAcacaaatatgaaattgttaAGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGACGGGAGATGGTGTAAACGATGCCCCTGCATTAAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGATATTGTCCTCACTGAACCTGGCCTGAGTGTCATTATTAGTGCAGTGCTCACTAGCAGAGCGATTTTCCAGAGGATGAAGAACTATACTATCTATGCTGTGTCAATCACCATCCGTATTGTGttTGGTTTCTTGTTTATTGCGTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTTTTGATTATTGCCATACTAAATGATGGTACCATCATGACAATATCCAAGGATAGAGTGAAACCATCTCCACTGCCAGATAGCTGGAAACTCAGGGAGATATTTGCTACTGGCGTTGTGCTAGGCAGTTACTTGGCACTAATGACAGTAATATTTTTCTGGGCAATGAAAGATACCAACTTCTTCCcgAACAAGTTTGGTGTGAGGTCAATCAGACATAGCCCTCATGAAATGATGGCAGCCTTATACCTACAAGTCAGTATAATAAGCCAGGCCCTAATCTTTGTCACTAGGTCCCGCAGCTGGTCTTTTGTTGAAAGACCTGGTCTTCTCCTACTAGGTGCTTTTTTGATTGCTCAGTTGGTGGCAACTTTTATAGCAGTATATGCTAACTGGGGCTTTGCAAGAATAAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTGTACAGTGTGACTGCCTTCACTACAAAGAAAGACTATGGCAAAGAAGAGAGGGAAGCTCAATGGGCAGCTGCACAAAGGACACTTCATGGTCTTCAGCCGCCAGAAACTTCCAACCTTTTCAGTGAAAAGAATAGCTACAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAGAGACGTGCTGAAGTTGCAAGGCTTAGGGAGCTTCATACTCTAAAGGGACACGTTGAGTCAGTGGTGAAGCTGAAGGGGCTTGACATTGACACAATTCAGCAGCACTATACAGTTTAG 1875 0.4352 MAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIINLCNCKEDVRKKVHAVIDKFAERGLRSLGVARQEIPEKSKDSPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDASISALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLALMTVIFFWAMKDTNFFPNKFGVRSIRHSPHEMMAALYLQVSIISQALIFVTRSRSWSFVERPGLLLLGAFLIAQLVATFIAVYANWGFARIKGMGWGWAGVIWLYSVTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNLFSEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0659 624 ProSitePatterns E1-E2 ATPases phosphorylation site. 33 39 IPR018303 -
Ssu5g0659 624 Gene3D - 291 539 - -
Ssu5g0659 624 Gene3D - 1 44 - -
Ssu5g0659 624 PANTHER CALCIUM-TRANSPORTING ATPASE 1 533 - -
Ssu5g0659 624 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 535 IPR023298 -
Ssu5g0659 624 PANTHER CALCIUM-TRANSPORTING ATPASE 533 604 - -
Ssu5g0659 624 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 265 380 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 PRINTS H+-transporting ATPase (proton pump) signature 290 306 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 PRINTS H+-transporting ATPase (proton pump) signature 462 483 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 PRINTS H+-transporting ATPase (proton pump) signature 321 346 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 PRINTS H+-transporting ATPase (proton pump) signature 262 278 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 PRINTS H+-transporting ATPase (proton pump) signature 147 165 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g0659 624 Gene3D - 45 190 IPR023299 GO:0000166
Ssu5g0659 624 PANTHER PLASMA MEMBRANE ATPASE 533 604 - -
Ssu5g0659 624 SFLD p-type atpase 13 342 IPR044492 -
Ssu5g0659 624 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 508 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu5g0659 624 PANTHER PLASMA MEMBRANE ATPASE 1 533 - -
Ssu5g0659 624 Pfam haloacid dehalogenase-like hydrolase 27 304 - -
Ssu5g0659 624 SUPERFAMILY HAD-like 27 337 IPR036412 -
Ssu5g0659 624 Gene3D - 573 624 - -
Ssu5g0659 624 Coils Coil 575 595 - -
Ssu5g0659 624 SFLD C1.7: P-type atpase like 13 342 - -
Ssu5g0659 624 PRINTS P-type cation-transporting ATPase superfamily signature 31 45 - -
Ssu5g0659 624 PRINTS P-type cation-transporting ATPase superfamily signature 313 325 - -
Ssu5g0659 624 PRINTS P-type cation-transporting ATPase superfamily signature 290 309 - -
Ssu5g0659 624 PRINTS P-type cation-transporting ATPase superfamily signature 207 217 - -
Ssu5g0659 624 PRINTS P-type cation-transporting ATPase superfamily signature 185 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0659 Ssu-Chr5 15547749 15551422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0659 1 624 Primary Pumps ATPases AT2G24520 84.839 0.0 1143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0659 K01535 - gmx:100791692 1166.76