Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0658 ATGCCGGGGTTAACGTGCAACGCTTGCAACGCGGAATTCAAGGATGACACAGAACAGAAGCTCCATTACAAGTCCGAGTGGCATCGGTACAACCTCAAGCGCAaggTGGCTGGGGTTCCTGGGGTGACAGAAGCACTATTTCTGGCTAGACAATCTGTGCTTGctcaagagaaaaataaattgagtgaAACCCCCATGCTCTATAGCTGTGGTCTTTGTGGAAAGGATTATAAGAGTTCTAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCTTCTGAAGGAACTAGTCGTGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGGCCTCCTCCTAGAAGAGAGGTAGATAACTCTGAAAACGAAGAAAGTGAGGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTGATGATGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGACAATGTTGATAtggatgaagatgatgatgatgattttggGGAGTTAGATCCCTCATGTTGCTTTATGTGCGATCAAGAGCACAAAACAATAGAAGACTGCATGGTTCACATGCACAAACATCACGGATTCTTTATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACCTATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCAAAAAGTCACTGTAAAGTGCAttatggtgatggtgatgacgAGGAGGAGGTAGAGTTAGAAGAATTCTATGATTATAGCAGCAGttatgTGGATGATCAAGGCAAGCAGCTTGTTGTATCTGGTGATGCGGCTAACAATGTAGAACTTGTTGGTGGGTCCGAGCTCATAATCACTAGGAAGTCTGGTGATAGAATATCAACCAAAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCACCAGCAAACTATATGGCCATCACTGCTGCATTGGCTTCAAGaTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGCGGATGAAAGTCCTGAAGGAAATGAATAAGTCAGGTGTGGAGAATATGCGAACCAAGATAGCGATGAAGAGTAATGTCATCCGGAACCTGCCAAAGAATGTCCCATATTAG 1233 0.4185 MPGLTCNACNAEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNKLSETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSRADEKAIIKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEDDLVDDAAKSLTDLNVNEHGDNVDMDEDDDDDFGELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMAAKSHCKVHYGDGDDEEEVELEEFYDYSSSYVDDQGKQLVVSGDAANNVELVGGSELIITRKSGDRISTKTLGSREFLRYYRQKPRPSPANYMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNKSGVENMRTKIAMKSNVIRNLPKNVPY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0658 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Ssu5g0658 410 PANTHER ZINC FINGER PROTEIN 622 1 410 IPR040025 -
Ssu5g0658 410 PANTHER ZINC FINGER PROTEIN-RELATED 1 410 - -
Ssu5g0658 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 239 IPR036236 -
Ssu5g0658 410 SMART c2h2final6 68 92 IPR013087 -
Ssu5g0658 410 SMART c2h2final6 234 261 IPR013087 -
Ssu5g0658 410 SMART c2h2final6 4 28 IPR013087 -
Ssu5g0658 410 SMART c2h2final6 183 205 IPR013087 -
Ssu5g0658 410 MobiDBLite consensus disorder prediction 130 145 - -
Ssu5g0658 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Ssu5g0658 410 MobiDBLite consensus disorder prediction 84 145 - -
Ssu5g0658 410 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Ssu5g0658 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Ssu5g0658 410 MobiDBLite consensus disorder prediction 84 109 - -
Ssu5g0658 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0658 1 410 C2H2 Transcription Factor Family AT4G31420 68.357 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0658 5 15424377 15427090 Ssu5g0658 5 15424377 15427090 ECH