Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0655 ATGTTCTCCAGCTCCCAATTCGATGCCACCACCGCCTTCTCCGGCGGCGGATTCATGTCTTCCCAGTCTTCTCAACTCAACGATTCCTCTCCCGCACCGCCGAAAAGCCGCGACACTCAGGGTTTGGTGCCGGTGACAGTGAAGCAGATAAGTGAAGCCTCGCAATCCGGTGATGAAAAGTCGAATTTTGTGATCAACGGTGTAGATCTGAACAATGTAACTTTGGTTGGGATGGTGTTTGAGAAAGTAGAGAGAAACACTGATGTGAATTTTGTTTTGGATGACGGAACAGGACGAATCAAATGTCGAAGATGGGTTAATGAGACTTATGACACAAAGGAAATGGAGGAAGTAATgAATGGTATGTACGTTCGTGTTTATGGGCATTTGAAAAGCTTTCAAGGTGTTAGGCAACTTGTCGCCTTCTCTGTCAGGCCCGTGACAAATTTTGATGAGGTCCCTTTTCACTTTATTGATTGCATACATAGCCATCTCCGCTCCAAAGTAAAGGTGGAAGGAATCACTTCTGCAAATCCTTCATCTGTCTCATCTTTGAACACTCCTGTCAAAAAAGCACCAAATGAATCTCAGGCATCATCATCAAATCCAGTATATGCACAATATAGCGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGACTACCTGCAGCAGCATTCAGATATGACAGATGAACGCGGAATACATGTTAATGAACTATCACGGGAGCTCAAGCTTCCATTGGACAAGATCATGTTGTCGCTGAAGACTCTTGGAGATGATGGTTTAGTATACTCCACCATTGATGACTACCATTACAAACAAGCTTGA 834 0.4376 MFSSSQFDATTAFSGGGFMSSQSSQLNDSSPAPPKSRDTQGLVPVTVKQISEASQSGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETYDTKEMEEVMNGMYVRVYGHLKSFQGVRQLVAFSVRPVTNFDEVPFHFIDCIHSHLRSKVKVEGITSANPSSVSSLNTPVKKAPNESQASSSNPVYAQYSVDGLKDCDKLVIDYLQQHSDMTDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDYHYKQA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0655 277 Pfam Replication protein A C terminal 179 271 IPR014892 -
Ssu5g0655 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 277 - -
Ssu5g0655 277 MobiDBLite consensus disorder prediction 177 202 - -
Ssu5g0655 277 MobiDBLite consensus disorder prediction 16 42 - -
Ssu5g0655 277 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Ssu5g0655 277 Gene3D - 38 169 IPR012340 -
Ssu5g0655 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Ssu5g0655 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Ssu5g0655 277 CDD RPA2_DBD_D 72 165 - -
Ssu5g0655 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu5g0655 277 PANTHER REPLICATION PROTEIN A-RELATED 1 277 IPR040260 -
Ssu5g0655 277 Gene3D - 207 277 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0655 Ssu-Chr5 15368562 15372542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0655 1 275 Core DNA Replication Machinery Family AT2G24490 50.719 3.76e-96 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0655 K10739 - gmx:100802512 469.159