Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0631 ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTCCAGTGCAATGACATTAAACATGTGACTGGGAAGGAAGTGTATCCTCCAGAATCAAATGTGGAGCACTTGCCTGGAGAAGAATCGAGTCAATCAACAGACCTCAAAAATATCAATGACTTGCGAGAGAAAGGATACATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCGTATCAGGGCCCCCTGTTGCAATGAAATTTTTGATTGCCGCCATTGTCACAACGAGGCAAAAAATGATATCAATATTGATCAGAAGCATAGACACGACATTCCCCGACACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAgctttttgatgatgatATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAAGTGGAGGAAGCGAGAATTTCTTCCATTGCTACAAGTGtgGTTGTTGTTACTCAACACTGCTGAAAAACAGTCACCCTTGTGTAGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTCGAGTACTTGTTCGAATCAAGAAATGATGTCACTGTTATGCCATGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGAGAACATCTCCAGTATTCATGCCCTCTCTGCTCAAAGTCAGTCTGCGACATGTCAAAGGTTTGGGAGAAATTTGACATAGAGATTGCTGCTACACCAATGCCTGAgccatatcaaaataaaatggtcAGTGTTCCTTCTTTTAGCTCTGATGATTATAGGTTTGGATCCTGTGCAATGATTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGCTCAAAAATGCACGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGAGCAAGTGGCAACGATTATTCATTGGTTTCATCAAAAGCCTTCTTCACTCGAGTTCTCTTGA 1026 0.4123 MGEVAVMHSEPLQFQCNDIKHVTGKEVYPPESNVEHLPGEESSQSTDLKNINDLREKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRSGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHLQYSCPLCSKSVCDMSKVWEKFDIEIAATPMPEPYQNKMVSVPSFSSDDYRFGSCAMIVVKLLTFSSILWLKNARTANPTTHDKQEAEQVATIIHWFHQKPSSLEFS 341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0631 341 SMART ring_2 200 242 IPR001841 -
Ssu5g0631 341 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 276 - -
Ssu5g0631 341 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 27 276 - -
Ssu5g0631 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Ssu5g0631 341 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Ssu5g0631 341 CDD RING-H2_Pirh2 199 243 - -
Ssu5g0631 341 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Ssu5g0631 341 SUPERFAMILY RING/U-box 199 248 - -
Ssu5g0631 341 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Ssu5g0631 341 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Ssu5g0631 341 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Ssu5g0631 341 Pfam Ring finger domain 199 242 IPR001841 -
Ssu5g0631 341 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu5g0631 Ssu-Chr5 14848466 14852152 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0631 62 272 C2H2 Transcription Factor Family AT3G18290 38.249 7.21e-44 159
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0631 K10144 - gmx:100803569 572.392
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0631 5 14848466 14852152 Ssu5g0631 5 14848466 14852152 ECH
Ssu5g0631 5 14848466 14852152 Ssu1g3391 1 87446765 87449738 PCT