LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g0626	ATGGGAAATCGGAAGTCAGAAGATGAAAGGATTGAAAGAGTAATTCGGGGTCTTTTAAAACTTCCCGAAAATCGAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGTACAACTTTCTCGACATTTGTCTGCACAAATTGCAGTGGGATACATCGAGAGTTCACCCATAGAGTAAAATCTGTGTCAATGGCTAAATTTACTCCGGAAGAAGTCACTGCTCTTCAAGCAGGTGGAAATGAGAGAGCAAAGCAGATTCATTTTAAAGAATGGGATCCTCTGCGCCATTCTTACCCTGATTCCTGtaatatACAGAGACTTCGAGATTTCATTAAGCATGTCTATGTGGAAAGAAGATTTACTGGTGAAAGTTGTAGTGGCAGTCTTCCTAGGATTAGATTGGATGAGAAGGAGGAGTCCTATGCAAGTAAGAAGAGTAGTTCATTTCGTTTTGACTTCAAAAGTCCTCATTCAAGTCCTGGTCCAAGAAGTGATGACACGAGTTTCAGATATTTATATGACGAAAGCAGAAGTCCTAGATATACACAGAAGTATTCAAGGCATGGACACAAAGCCAGAAGTCCTATAAAATTTGAGGTTGTTGATGACAGATTCCGAGATGATGAACATAGAAATCGCAGGCTTTCAAATATAGAATCAAAGCTAAGACAAATTTCATTCGATGGTCAGAAGAATGTGGACAGATCCCAACTCCCTGCTGTACCTCCTTTGGGAGAAATATTAAAGGAAAATGCTCCATCTCAACAAGTCAAACCTTCTGGTGGAGAGGGTTCTGTTGAGGAAAATCCAtctgaacaaaaaaataataatccagAAAGCTCCATTGATTTGAGTACCAAGTCTCAGGCTACTCATGCTGCTGCTGGAGTTGGACCAGAAATACCACGTATAACACAATCAAATGAAAGTAACTGGGCCATATTTGAAGCTTCAACAGAGAAAAATGATCCTAAAACTCCAAACACAAATACCTTGAAACCTTCTACAACAGAGGTAGCATCTGGAGCAGCAACATCTGCAAAAAATCCTTTGGACCTTTTACTTTTCGAATTGTCAGGCCCTGTGACTCCAGCGACTGGTGGCATGTCACAAGTCCCAAATGGTGCTAATAATGATCCAACAATTACAAAAGTAGAAAATTCCAGTGCTTGGGACTTTCCACCTATTTCAATAGGGCAGACAACTGCATCATCCAACAATTCTAATGTTTGGACATTTACATCAACCCCAGCCACTGAGTTAGCACAACCTTCAAATGAAGTTCCTCCACATACTGAAGTTTCACATGCACATAAACCATCAACCATGCAATATCTTCCTTCTGTATCGGCCAGCTGTAGTTCAACCACACAACCAACAAATTCACCAGTTAAAGATGTAGCTCCAAATAATCAGCCATCAGTTGCTCCTAGTACAAATGACTCTTCATGTGCTTTTACTAAACTATCTTCTCAAATTACCTCAAAACCTACTCAAGAAACCAGACCTGATGTTGGCTCGCAGCCCGGTAAAGTGGAAACCAGGTCTAGTGAAAGAAAGGAACTTCCAGAGGACCTATTCACGTCAAGCTACTCATCTTGCCCTGCACCACTTGCAGGTTGGCAGAATGTTCAACCTCATGGCATGGGATATGGCATGCAGTATTATCATAATGCAATGCCTCCCTCAGCCCTTCCCATTGCACCAATGTCCGTAAACCCCTTTGATGTAACTGATGGAAGAAGTCTAATCCACACCTCATCGCTTCCTACTATGGCATCTTTGCAAGATGTACCGCCAGCTGCATCACCCAGAGCAGGTTTAATGCATGCTTCAAGCCTTGGGTCTTTAGGGACAACGGTGTCTCAGTCCCCATGTTATTCATCCCCAGTTCCTATGGGTGTGTACTTTGATCAAGCTAATAATAACGAGCAACCCACTAGACCACAAAGAGCTGACAGCTTCAACAGTGAGATAACTGCTTTTGGATCTATAGATCGCATTCAACAGTCAAAAAGGGGATACATGCAGACCCCCAAAACTCCAAATTCATCATCCAATACAAGAGGAAACCCATTTGAGTTTGACTAG	2097	0.4154	MGNRKSEDERIERVIRGLLKLPENRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIHFKEWDPLRHSYPDSCNIQRLRDFIKHVYVERRFTGESCSGSLPRIRLDEKEESYASKKSSSFRFDFKSPHSSPGPRSDDTSFRYLYDESRSPRYTQKYSRHGHKARSPIKFEVVDDRFRDDEHRNRRLSNIESKLRQISFDGQKNVDRSQLPAVPPLGEILKENAPSQQVKPSGGEGSVEENPSEQKNNNPESSIDLSTKSQATHAAAGVGPEIPRITQSNESNWAIFEASTEKNDPKTPNTNTLKPSTTEVASGAATSAKNPLDLLLFELSGPVTPATGGMSQVPNGANNDPTITKVENSSAWDFPPISIGQTTASSNNSNVWTFTSTPATELAQPSNEVPPHTEVSHAHKPSTMQYLPSVSASCSSTTQPTNSPVKDVAPNNQPSVAPSTNDSSCAFTKLSSQITSKPTQETRPDVGSQPGKVETRSSERKELPEDLFTSSYSSCPAPLAGWQNVQPHGMGYGMQYYHNAMPPSALPIAPMSVNPFDVTDGRSLIHTSSLPTMASLQDVPPAASPRAGLMHASSLGSLGTTVSQSPCYSSPVPMGVYFDQANNNEQPTRPQRADSFNSEITAFGSIDRIQQSKRGYMQTPKTPNSSSNTRGNPFEFD	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g0626	698	PANTHER	ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN	1	696	-	-
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	449	526	-	-
	Ssu5g0626	698	CDD	ArfGap_AGFG	12	122	-	-
	Ssu5g0626	698	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	449	507	-	-
	Ssu5g0626	698	PANTHER	ARFGAP/RECO-RELATED	1	696	IPR044820	GO:0005096
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	255	294	-	-
	Ssu5g0626	698	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	123	IPR001164	GO:0005096
	Ssu5g0626	698	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Ssu5g0626	698	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Ssu5g0626	698	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Ssu5g0626	698	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	251	346	-	-
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	152	167	-	-
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	642	698	-	-
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	152	172	-	-
	Ssu5g0626	698	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Ssu5g0626	698	MobiDBLite	consensus disorder prediction	305	346	-	-
	Ssu5g0626	698	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g0626	Ssu-Chr5	14571650	14580070	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g0626	12	151	C2H2 Transcription Factor Family	AT4G05330	30.921	6.16e-12	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g0626	-		-	gmx:102660856	1040.8