Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0617 ATGGAGCGGCCCGGGAGCTTAAACGGCAGTCAGCATGTTATAGAAATAGCTGGGAGTGCCGATGCTTCCACATTGTCTGCTTCACATCATGATAGACATTTTAATGGCGTAGATGCGACGCAGCATGAAGAAAGAATTGGCGGTGCAAGGATACCTCTTTCTCAGCCTTCGGTTTCAGCCACTAGTGTATCTAATGGGTCAAATAGTAGGAGTTCCTCGTTCATAAGGCGTGGGGATACTCGGCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCAATCGttgttttgtctttgtcaaGGCATGAACATCCGCATACCCCTTTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTTCTTTTCAGTTCCAGAACTAATGGTGGAGAGGATGGTCAGGCTGCTGTTGCGTCCTCCAGAAGCAGTCAAGCTTCAATATTGCTGAATAGAAGATTGCTTTTTGCTGTATGGTTTGTTGTCGGAAATGTATGGATCTTTGGGGGACATTCATCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTTTGCCAACTTACAAGTTcaagatgaagaaaaataaaagaaatggcGAAGGCAACTCAGCTGCTGCCGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATATCTGGAGATGATGCAGTTTGCTGCATCTGCCTagcaaaatatgaaaataacgATGAGCTGAGAGAATTGCCTTGCTCTCATCTTTTCCACAAAGACTGCGTCGATAAATGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGATGTTGGTGAGAACTTAGCAGGATTGGTCTCTGGAGAAGATGCCAGCCAACAGCGGGGCGAGAGCAGGGTTGAGAATGGCCTCACAAATACCTCAGTTTAG 1218 0.4319 MERPGSLNGSQHVIEIAGSADASTLSASHHDRHFNGVDATQHEERIGGARIPLSQPSVSATSVSNGSNSRSSSFIRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPHTPLFQWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEDGQAAVASSRSSQASILLNRRLLFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSAAAEGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLAGLVSGEDASQQRGESRVENGLTNTSV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0617 405 MobiDBLite consensus disorder prediction 48 85 - -
Ssu5g0617 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 397 - -
Ssu5g0617 405 CDD RING-H2_RNF111_like 329 373 - -
Ssu5g0617 405 MobiDBLite consensus disorder prediction 385 405 - -
Ssu5g0617 405 Pfam Ring finger domain 330 371 IPR001841 -
Ssu5g0617 405 SUPERFAMILY RING/U-box 322 377 - -
Ssu5g0617 405 SMART ring_2 330 370 IPR001841 -
Ssu5g0617 405 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Ssu5g0617 405 MobiDBLite consensus disorder prediction 54 74 - -
Ssu5g0617 405 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 397 - -
Ssu5g0617 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 378 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0617 Ssu-Chr5 14200246 14213348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0617 76 377 C3H Transcription Factor Family AT1G80400 57.500 3.36e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0617 - - gmx:100778728 701.819