Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0613 ATGGATAAAGAAAATGCCGGGATCGGTGGCGGTGCTAGAGAGAGTGAAGAGTGTAGTGTTCGGGTCACTCGAGCAATGGCTAGAGCCTTGGGAGGGGTTTCTGCCTCCTCAAGACCCTCTTTTAAAAGGGAACGAAAAGGCAAAGCTTCTGTTGTGCCCACTGATGATAACAGGAGAGTACTGGGAGATGTGACTAACGTAAGCAGAAAATCACAGGATAAGTGTGCCGAGACATCGAAATTTCAGACAAGAGGAGGTTATAAGAAGACGAACACAAGGCGAGCTTCTGAAGTCTCCATGCACGTTTTGTCAACTCAAGATGATGTTAGAGCAAAGTTAGCAAAAGATTTAACCACAAAAACGATGGTACAGTCACATGACACTATTGTAGCTGAAAGGCTGGAAGACAGAGAGCAAGTGCAACCTTGTATGTTGAGTGGCATGAGAGGACGTGTTATGGCAGGTCCCCTGCTTTCAATGCAGGGCTCTTTGAAGTCTGATGAACACCTTAGCTCTCCAAACAAAGACATTGATATGATTTCTGAGAAACTAAAACCTTCAGATGGTTTGGGCATTGTGGACATTGATTCGGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCtgatatatacaataatatatgtgTCAGAGAGTTTGAAAGGAGACCGTTAACCAATTACATGGATGAGTTGCAGCAAGATATCACTCCAAGCATGCGGGGAATTCTGATCGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGCTAGCTCCAGACATTCTTTACCTTACAGTGAATCTCATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAAAGGCTCCAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATGTGTGCTCCTCAAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAGTCTATTGCATTTTCAATTATCTGTTCCCACCGCTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAATCTTCTCACAAGGTTTCTTATGTTGAACTGGAATTCCTAGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAATTTCTACCTTCCATGATAGCTGCATCTGCTGTATTACTTGCCAGATGGACCCTCAGCCAGTCAGAACATCCATGGAATTCAACTATGGAACACTATACAAATTACAAAGCGTCAGAGCTTAAAACTACTGTCCTAGCACTGGCAGATTTGCAACTTGATACCAAAGGCTGTTGTCTGAATGCTATACGTGAAAAATATAAACAGCAGAAGGTTAGAAATGCACATGCCAAAAGACGAACTAGTCACATGCACCAATTGCTATATATCACAAGGCTTATTACGTTTAATTGTTCTGCTTTCTTTAACCTACTCTCCACGTGA 1473 0.4168 MDKENAGIGGGARESEECSVRVTRAMARALGGVSASSRPSFKRERKGKASVVPTDDNRRVLGDVTNVSRKSQDKCAETSKFQTRGGYKKTNTRRASEVSMHVLSTQDDVRAKLAKDLTTKTMVQSHDTIVAERLEDREQVQPCMLSGMRGRVMAGPLLSMQGSLKSDEHLSSPNKDIDMISEKLKPSDGLGIVDIDSVELKDPQVWSSYAPDIYNNICVREFERRPLTNYMDELQQDITPSMRGILIDWLVEVSEEYKLAPDILYLTVNLIDRFLSQSLIQKQRLQLLGVTCMLIASKYEEMCAPQVEEFCFITDNTYTKAEVLKMESEVLSLLHFQLSVPTAKTFLRRFILAAQSSHKVSYVELEFLANYLAELTLVEYSFLQFLPSMIAASAVLLARWTLSQSEHPWNSTMEHYTNYKASELKTTVLALADLQLDTKGCCLNAIREKYKQQKVRNAHAKRRTSHMHQLLYITRLITFNCSAFFNLLST 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0613 490 SUPERFAMILY Cyclin-like 201 338 IPR036915 -
Ssu5g0613 490 Coils Coil 443 463 - -
Ssu5g0613 490 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Ssu5g0613 490 PIRSF Cyclin_A_B_D_E 19 474 IPR039361 -
Ssu5g0613 490 SMART Cyclin_C_2 341 466 IPR004367 -
Ssu5g0613 490 MobiDBLite consensus disorder prediction 31 51 - -
Ssu5g0613 490 Pfam Cyclin, N-terminal domain 212 339 IPR006671 -
Ssu5g0613 490 Gene3D - 226 339 - -
Ssu5g0613 490 CDD CYCLIN 242 331 IPR013763 -
Ssu5g0613 490 Pfam Cyclin, C-terminal domain 341 458 IPR004367 -
Ssu5g0613 490 SUPERFAMILY Cyclin-like 340 456 IPR036915 -
Ssu5g0613 490 SMART cyclin_7 248 332 IPR013763 -
Ssu5g0613 490 SMART cyclin_7 345 433 IPR013763 -
Ssu5g0613 490 PANTHER CYCLINS 43 457 IPR039361 -
Ssu5g0613 490 CDD CYCLIN 339 431 IPR013763 -
Ssu5g0613 490 Gene3D - 212 457 - -
Ssu5g0613 490 PANTHER CYCLIN-A2-4 43 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0613 Ssu-Chr5 14146900 14153045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0613 19 456 Core Cell Cycle Gene Families AT5G25380 49.890 8.25e-139 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0613 K06627 - gmx:100777132 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0613 5 14146900 14153045 Ssu1g3407 1 87682431 87687243 PCT