Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0608 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGAAAAGTGTCCTCTGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACCCAATTAATTAAGGCTAGAgaacagcagcagcagcagcaacaacagcaGCAGGCACAACCTCAGCAGTCACAACATCAACAACAGCAGCAGCAACAACACATGCAGATGCAACAAATCCTGTTACAGAGGGCTCAgcagcaacagcaacaacaacaacaacaacagcaaccacaacAGCAGCAGCAACAGCAACCACAGCCGCAACATCAGCAGCCACCACCACAGCAACAACAGGGTAGGGATAGGGCTCATCTCCTAAATGGTGGTACGAATGGGTTAGTTGGAAACCCAAGCACTGCAAATGCACTAGCAACAAAGATGTACGAGGAAAGGTTAAAACTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTGTTGGACCCCAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCTGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGCTTGGAACAACTACGTTCTGGTCTACTCCAGCAACAGAAACCTTTCATACAGGCTCAACAGTCTTTTCATCAACTTCCAATGTTGACAGCGCAGCATCAGCAACAGCTAATGCTAGCACAACAAAATTTGGCTTCGCCATCTTCCAGTGATGATAGAAGATTCAGAATGCTGCTGAATAATAGGAATATGGGTGTAAATAAGGATGGCCTTTCGAACCCTGTCAGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTACTTTTCCGCGTGGTGATACAGAAATGCTAATGAAGTTGAAACTGGCTCACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTTCAACAACATACTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAACATGCATCAGCAAGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGATCAGGTCTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATTCCTGCTTTACCTCATAATGGTAGTTCTTCAAAGGCATTAATGATGTTTGGTGCAGATGGCGCCGGAACTCTGACATCACCTTCAAACCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGAGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGATAATCCTGGGTATTCGCTTCGTACCTTTACAGGACATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGCGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTATAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCATGTCGATATTCTCTAAAgggacATACAAAATCAATACATTCTGTATGTTGGGACCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACAGGGAGTGAAGGGGAGTGTGTTCATGAGCTCAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACGTATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACCCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCAGTCTCCACCGTAAATGGTTTGGTTGCTTCTGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2691 0.4329 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQAQPQQSQHQQQQQQQHMQMQQILLQRAQQQQQQQQQQQQPQQQQQQQPQPQHQQPPPQQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAQQSFHQLPMLTAQHQQQLMLAQQNLASPSSSDDRRFRMLLNNRNMGVNKDGLSNPVSDVVSNVGSPLQAGGPTFPRGDTEMLMKLKLAHLHQHQQQQNANPQQQQLQQHTLSNQQSQTSNHNMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSIPALPHNGSSSKALMMFGADGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCAIVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 864 896 - -
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Ssu5g0608 896 Pfam WD domain, G-beta repeat 651 686 IPR001680 GO:0005515
Ssu5g0608 896 Pfam WD domain, G-beta repeat 775 809 IPR001680 GO:0005515
Ssu5g0608 896 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Ssu5g0608 896 Pfam WD domain, G-beta repeat 613 643 IPR001680 GO:0005515
Ssu5g0608 896 Pfam WD domain, G-beta repeat 859 896 IPR001680 GO:0005515
Ssu5g0608 896 MobiDBLite consensus disorder prediction 131 179 - -
Ssu5g0608 896 Pfam LisH 10 36 IPR006594 GO:0005515
Ssu5g0608 896 Coils Coil 115 137 - -
Ssu5g0608 896 CDD WD40 608 896 - -
Ssu5g0608 896 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 896 IPR044716 GO:0003714
Ssu5g0608 896 MobiDBLite consensus disorder prediction 412 448 - -
Ssu5g0608 896 SMART Lish 8 40 IPR006594 GO:0005515
Ssu5g0608 896 Gene3D - 746 896 IPR015943 GO:0005515
Ssu5g0608 896 Gene3D - 588 745 IPR015943 GO:0005515
Ssu5g0608 896 MobiDBLite consensus disorder prediction 459 518 - -
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 643 IPR001680 GO:0005515
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Ssu5g0608 896 MobiDBLite consensus disorder prediction 412 528 - -
Ssu5g0608 896 MobiDBLite consensus disorder prediction 131 147 - -
Ssu5g0608 896 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Ssu5g0608 896 SUPERFAMILY WD40 repeat-like 606 896 IPR036322 GO:0005515
Ssu5g0608 896 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ssu5g0608 896 SMART WD40_4 857 896 IPR001680 GO:0005515
Ssu5g0608 896 SMART WD40_4 647 686 IPR001680 GO:0005515
Ssu5g0608 896 SMART WD40_4 772 810 IPR001680 GO:0005515
Ssu5g0608 896 SMART WD40_4 816 855 IPR001680 GO:0005515
Ssu5g0608 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Ssu5g0608 896 SMART WD40_4 690 730 IPR001680 GO:0005515
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 864 896 IPR001680 GO:0005515
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Ssu5g0608 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Ssu5g0608 896 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0608 Ssu-Chr5 13873804 13895643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0608 691 895 Miscellaneous Gene Families AT5G08390 25.714 4.07e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ssu5g0608 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0608 - - gmx:100779972 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0608 5 13873804 13895643 Ssu1g3417 1 87873529 87883418 PCT