Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0594 ATGGGACCATTTCGAGGAATAATTCAAGATGTCAAAGGAAGAGTTGAATGTTATAAACAAGATTGGGTTAGTGCATTCTGTTCTGGCATTAGGCTATTGGCTCCAACTTTCTACGTATTCTTCGCTTCTGCTCTTCCTGTTATTGCTTTTGGAGAGCAACTTCACAGAGATACAGGTGGAAGCTTGAGCACAGTGGAAACACTGGCATCAACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGTCAGCCTTTGTTGATTTTGGGAGTTGCTGAACCAACTGTTATAATGTACACTATTCTATATGAGTTCTGCAAAAATAGGCCAGAACTAGGTGCCAAGCTTTTTCTGCCTTGGGCTGGTTGGGTTTGTGTCTGGACAGCATTCTTGCTGATTATGCTTGCAATTTTCAACGCGTGCACAGTTATCACAAGGTTCACAAGAATTGCAGAGGAATTATTCGGCATGCTAATTACTGTCCTTTTCTTTCAAGAGGCTATAAAGGGACTCATAGCCGAGTTTGGCACGCCCAAGGCTGAAAATCCTTTGTTAGAGGAATATCAATTCCATTGGAGGTTTACAAATGGACTACTTGCaatcattttctcttttggaaTTCTTTTCACTGCCATGGTAAGCAGAAGAGCAAGATCATGGAGATATGGAACAGGGTGGCTACGAGGTTTCATCGCAGATTATGGGGTTCCAATAATGTTAGTGATTTGGACTGCACTATCTTATACTCTACCAGGCAAAGTTCCATCTAGTGTTCCTAGAAGGCTGGTTTGTCCACTTCCCTGGGAATCTGCCTCTCTCTACCACTGGACAGTAGTAAAGGATATGGGGAAGGTACCCTTGGTTTATATCTTTGCGGCATTTGTTCCAGCAGTGATGGTAGCAGGTTTATACTTTTTTGATCATAGTGTAGCTTCTAAGATGGCTCAACAGAAGGAGTATAACCTTCAAAAACCATCAGCTTACCACTATGATATGTTCCTGCTTGGTGTAATgACTCTGATTTGCGGTATTCTTGGCCTTCCCCCATCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTGGCAGTTCTTAGGAGGCAGTTGATCCGAAAGAAGGTGGTAAAAAGAGCCAAGGAATGCATTCAGCAACAAGGAAGCAACTCTGAATTGTATGGAAAGATGCAAGCTGTGTTTGTAGAAATGGATACAGCACCTACTGTTAAAGAGTTAGAGAATTTGAAGGAGGCTGTAATGAAGTCTAATGAAAAGGATGATGCAAAGGAAAATTTTGATCCTGATAAACACATAGATGCCTATCTACCTGTCCGGGTTAATGAGCAAAGAATGAGTAACTTATTACAGTCTCTTCTGGTTGGCCTATCAATTTATGCCGTTTATATCATCAAAATGATACCTACTTCAGTTCTATGGGGATATTTTGCATACATGGCTATTGATAGTCTTCCAGGGAATCAATTCTGGGAAAGGATATTGCTTCTTTTCATCCCACCAAGCCGGCGCTACAAAATTTTGGAAGGTTCTCATGCCTCGTTTGTGGAATCAGTACCATTCAAGACCATAGCTGCATTCACAATCTTACAGTTTGTGTATTTTCTAATCTGTTTTGGAGTGACATGGATACCTATAGGAGGAATACTTTTTCCATTACCCTTCTTCCTTCTCATAACTTTAAGAGAGCATTTGCTTCCAAAGCTATTCAAGCCCAATCATCTTCAAGAACTAGATGCTGCTGAGTACGAGGAAATTGTTGGTGCTCCACATATTCCACATAATATACCACCAAGGGATAAAGAGCCACATGATGCTGAAAGTGAAAAGTGCTCAGAAGATTATTATGATGCAGAGATATTGGATGAGATGACAACTCACAGGGGAGAATTGAAGCTTAGAACTGTAAGCCGAAATAATAGTAGAAGCTTCAGCCACAGCTTCAGTGAAGACAGGCAATATTAG 1983 0.407 MGPFRGIIQDVKGRVECYKQDWVSAFCSGIRLLAPTFYVFFASALPVIAFGEQLHRDTGGSLSTVETLASTAICGIIHSIFGGQPLLILGVAEPTVIMYTILYEFCKNRPELGAKLFLPWAGWVCVWTAFLLIMLAIFNACTVITRFTRIAEELFGMLITVLFFQEAIKGLIAEFGTPKAENPLLEEYQFHWRFTNGLLAIIFSFGILFTAMVSRRARSWRYGTGWLRGFIADYGVPIMLVIWTALSYTLPGKVPSSVPRRLVCPLPWESASLYHWTVVKDMGKVPLVYIFAAFVPAVMVAGLYFFDHSVASKMAQQKEYNLQKPSAYHYDMFLLGVMTLICGILGLPPSNGVLPQSPMHTKSLAVLRRQLIRKKVVKRAKECIQQQGSNSELYGKMQAVFVEMDTAPTVKELENLKEAVMKSNEKDDAKENFDPDKHIDAYLPVRVNEQRMSNLLQSLLVGLSIYAVYIIKMIPTSVLWGYFAYMAIDSLPGNQFWERILLLFIPPSRRYKILEGSHASFVESVPFKTIAAFTILQFVYFLICFGVTWIPIGGILFPLPFFLLITLREHLLPKLFKPNHLQELDAAEYEEIVGAPHIPHNIPPRDKEPHDAESEKCSEDYYDAEILDEMTTHRGELKLRTVSRNNSRSFSHSFSEDRQY 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0594 660 PANTHER ANION EXCHANGE PROTEIN 3 659 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu5g0594 660 PANTHER BORON TRANSPORTER-LIKE PROTEIN 3 659 - -
Ssu5g0594 660 Pfam HCO3- transporter family 445 535 IPR011531 GO:0006820|GO:0016021
Ssu5g0594 660 Pfam HCO3- transporter family 195 369 IPR011531 GO:0006820|GO:0016021
Ssu5g0594 660 Pfam HCO3- transporter family 3 177 IPR011531 GO:0006820|GO:0016021
Ssu5g0594 660 Gene3D Helical hairpin bin 14 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0594 Ssu-Chr5 13506434 13510451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0594 2 643 Antiporters AT5G25430 68.006 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0594 K24194 - gmx:100808880 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0594 5 13506434 13510451 Ssu5g0594 5 13506434 13510451 ECH
Ssu1g3428 1 88049494 88052869 Ssu5g0594 5 13506434 13510451 ECH
Ssu5g0594 5 13506434 13510451 Ssu1g3428 1 88049494 88052869 PCT