Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0593 ATGAAGATGTTTGCAATGTGTGGTAGGGGCAATGATGGTAAGTGGGAAGAAGCAGACGAAAAAGAGATTGAGAGGGGAGAAGACGGCAGCCAATACAGCCTTGCGGGCATTCTTCTTCCCTCTCTCGGTGCCACTGCTGCCCACAATGGCAGCTGCAGACCAAAGCTTCGTCGTTACATTATCTCTCCATATAATCGTCGTTACAAACTATGGAGCAAGTTTCTGATCATATTGGTTTTCTACACTGCTTGGATTTGTCCATTTGAATTTGGTTTCCTTGATAACTCAAAGGGTGCACTGGCTATAACCGACAATGTTGTAAATGGGTTTTTTGCCATTGATATTGTGCTCACCTTCTTCGTTGCCTACCTTGATAAGTCCACTTATCTGCTAATTGATGACCACAAACTCATTGCTTTGAGATATGCTAAATCCTGGTTGATATTGGATGTCCTTGCAACCATTCCTTATGAAGTTGTTCATAGTATTTTGCCACCTTCTCTTCAGATATATAGTTACTTAAATATTCTTCGCCTTTGGCGCCTCCATCGAGTTGGTGCCATGTTTGCAAGATTGGAAAAGGACAAGAATTATAACTACTTTTGGGTGCGCTGTTGCAAGCTTACATTTGTTACTCTATTCTCAATACATGCTGCTgcatgttttttctattttcttgctGCAAGGGATAATCCAAAATCTACATGGCTTGGACTTGTTCCTGATGCCATTGACCAGAATCTATGGGGAAAATATATAGTAACATTATATTGGTCTATAGTGACTCTTGCATCAGTTGGTTATGGTGATCTACATCCTGTAAATACGAAAGAAATGGTATTTGACATtttgtatatactttttaatcttGGACTCACGTCATATCTGATAGGCAACATGACCAACTTGGTTGTTCACTGGACAGAGAGAACTAAGAGATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCAAAAGGAATCACTTGCCTACCCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAAGTACAGAACTAATTTAGAAGGACTACAACATCAAGAAATCATTGACTCCCTTCCAAAAGCCATTCATTCTAGCATCTCACACTACCTATTCTTTTCACTTATTGACAAAGCGTACTTGTTTCATGGAGTGTCAAGTGACCTACGTTTTCAACTGGTCACAGAGATGAAGGCTGAGTATTTTGCTCCAAAGGAGGACGTGATTTTGCAAAATGAAGCACCAACAGacttttatatattcattactGGAGCTGCAGATCTTATCATTCATAAGAATGGAATAGAACAAGTTGTTGGTGAGGCAAAGTCAGGAGATGTAGTTGGGGAAATAGGAGTGCTATGTTATAGGCCACAATTGTTTACAATTCGAACCAAGCGATTGAGCCAGATTTTGCGTTTGAATCGAACCATATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGAACAATGATCATGAACAATTTTCTTCAACATTTACATGAATCAAGTGATCCACTGATGAAAGAAATTTTGGCAGAAACAGAGGCAATGTTGGCTAGGGGCAAAATGGATTTGCCTATCAGTTTAATGTTTGCAACTAGCAGAGGTGATGATATATTGTTGTATCGATTGTTGAAGAAGGGTTCAGATCCAAATGAACTAGATAAGAATGGAAGGACAGCATTgCATATGGCAGCTTCTAAAGGCAGTGACCATTGTGTAGTTTTGCTTCTAGAACATGGGGCCAATCCCAACATTCGAGaCTTAGATGGAAATGTCCCATTGTGGGAAGCAATAAAGGGTGGGCATGAATCTGTCATGAAACTTCTTATAGACAATGGTGCAGACATATCATGTGTAGATGTAGGTAGTTTTGCATGCATTGCTATTGAgcaaaataacttaaaattactCAAAGACATTGTTCAATGTGGTGGGGACGTGACACAGTCCACAAGCAATGGAACCACTTCACTCCATGCTGCAGTGTGTGAAGGAAATGTTGAAATAGTTAAGTTCCTTCTAGACCAAGGAGCAGACATTGATAAGCTAGATGGTAATGGCTTGACTCCAAGGTCTTTAGCAGATCAACAGTGCCACCAAGAAATACTAGACATATTCCAGAAAGTTGGACTTAACACAACAAAACATGTTAGCCCTAGGTCCTTTGTTGGGAAGTGCCAAAGTGAACCCACTATACCAGCCATTCCCCAAGGAAGCAAGCCACCTAATCAAGAACTAGCATGGTTTGATAATCATCAAAGAAGAAGGGTCAGCCCTTTCCACAATTCCTTTTTTGGGATAATGTCAACTGCAAATTATGATAAAAGGGATTCCACAACGGCATCTCAAAGTAGTCACACTAGTAGAGAAGAATTACCCGCCAGAGTAATGCTTAGTTGTCCAGAGAAAGGTGAACGTGCcaaaaagcttatttttttgccaaattCCTTTGAAGAATTACTACGTATTGGTGCTGAAAAGTTTGATTTCTCTCCCACCAAAATATTGACCAAAGAAGGAGCTGAAGTTGACGACATATACGTTATAAGAGATGGTGATCTTCTTGTTCTTATTTAG 2595 0.3865 MKMFAMCGRGNDGKWEEADEKEIERGEDGSQYSLAGILLPSLGATAAHNGSCRPKLRRYIISPYNRRYKLWSKFLIILVFYTAWICPFEFGFLDNSKGALAITDNVVNGFFAIDIVLTFFVAYLDKSTYLLIDDHKLIALRYAKSWLILDVLATIPYEVVHSILPPSLQIYSYLNILRLWRLHRVGAMFARLEKDKNYNYFWVRCCKLTFVTLFSIHAAACFFYFLAARDNPKSTWLGLVPDAIDQNLWGKYIVTLYWSIVTLASVGYGDLHPVNTKEMVFDILYILFNLGLTSYLIGNMTNLVVHWTERTKRYRDTVQSASNFAKRNHLPTRLQEQIFAHLLMKYRTNLEGLQHQEIIDSLPKAIHSSISHYLFFSLIDKAYLFHGVSSDLRFQLVTEMKAEYFAPKEDVILQNEAPTDFYIFITGAADLIIHKNGIEQVVGEAKSGDVVGEIGVLCYRPQLFTIRTKRLSQILRLNRTIFLNLAHSNVGDGTMIMNNFLQHLHESSDPLMKEILAETEAMLARGKMDLPISLMFATSRGDDILLYRLLKKGSDPNELDKNGRTALHMAASKGSDHCVVLLLEHGANPNIRDLDGNVPLWEAIKGGHESVMKLLIDNGADISCVDVGSFACIAIEQNNLKLLKDIVQCGGDVTQSTSNGTTSLHAAVCEGNVEIVKFLLDQGADIDKLDGNGLTPRSLADQQCHQEILDIFQKVGLNTTKHVSPRSFVGKCQSEPTIPAIPQGSKPPNQELAWFDNHQRRRVSPFHNSFFGIMSTANYDKRDSTTASQSSHTSREELPARVMLSCPEKGERAKKLIFLPNSFEELLRIGAEKFDFSPTKILTKEGAEVDDIYVIRDGDLLVLI 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0593 864 Pfam Cyclic nucleotide-binding domain 404 488 IPR000595 -
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat region circular profile. 659 690 - -
Ssu5g0593 864 SMART cnmp_10 384 501 IPR000595 -
Ssu5g0593 864 SUPERFAMILY Voltage-gated potassium channels 63 305 - -
Ssu5g0593 864 Pfam Ion transport protein 69 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu5g0593 864 SMART ANK_2a 659 688 IPR002110 GO:0005515
Ssu5g0593 864 SMART ANK_2a 529 558 IPR002110 GO:0005515
Ssu5g0593 864 SMART ANK_2a 595 624 IPR002110 GO:0005515
Ssu5g0593 864 SMART ANK_2a 626 655 IPR002110 GO:0005515
Ssu5g0593 864 SMART ANK_2a 562 591 IPR002110 GO:0005515
Ssu5g0593 864 ProSiteProfiles KHA domain profile. 801 864 IPR021789 -
Ssu5g0593 864 SUPERFAMILY cAMP-binding domain-like 309 504 IPR018490 -
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Ssu5g0593 864 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 5 863 - -
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat region circular profile. 562 593 - -
Ssu5g0593 864 CDD CAP_ED 384 489 IPR000595 -
Ssu5g0593 864 SUPERFAMILY Ankyrin repeat 533 717 IPR036770 -
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 252 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 81 88 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 104 114 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 278 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 115 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 PRINTS EAG/ELK/ERG potassium channel family signature 296 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu5g0593 864 ProSiteProfiles cAMP/cGMP binding motif profile. 384 503 IPR000595 -
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat region circular profile. 595 626 - -
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat profile. 562 594 IPR002110 GO:0005515
Ssu5g0593 864 Gene3D - 71 305 - -
Ssu5g0593 864 Pfam Ankyrin repeats (3 copies) 633 712 IPR002110 GO:0005515
Ssu5g0593 864 Pfam Ankyrin repeats (3 copies) 534 624 IPR002110 GO:0005515
Ssu5g0593 864 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Ssu5g0593 864 PRINTS Ankyrin repeat signature 675 689 IPR002110 GO:0005515
Ssu5g0593 864 PRINTS Ankyrin repeat signature 563 578 IPR002110 GO:0005515
Ssu5g0593 864 Gene3D - 530 714 IPR036770 -
Ssu5g0593 864 PANTHER POTASSIUM CHANNEL AKT1 5 863 IPR045319 GO:0005249|GO:0006813
Ssu5g0593 864 Pfam KHA, dimerisation domain of potassium ion channel 801 863 IPR021789 -
Ssu5g0593 864 Gene3D Jelly Rolls 352 521 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0593 Ssu-Chr5 13468464 13475279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0593 30 863 Ion Channels AT2G25600 58.442 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0593 K21867 - gmx:100808832 1475.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0593 5 13468464 13475279 Ssu5g0593 5 13468464 13475279 ECH
Ssu5g0593 5 13468464 13475279 Ssu1g3429 1 88055909 88056910 PCT