Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0589 ATGGCAAAGAAGAAGAATCCACTGGTGTTTATGGATGTTTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTATTCTATGACGTTGCTCCGAAGACTGCTGAAAATTTTCGTGCACTATGTACAGGAGAAAGGGGAGTCAGTCCAAATACTGGAAAATCACTGCACTACAAGGCTTCTTTCTTCCATCGAATTGTTAAAGGCTCCATTGTCCAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGTATATATGGATCCAAGTTCCCAGATGAGTCACCTAGGCTAAAGCATGATGCTCCAGGCCTTCTATCCATGGCAATCGCTGATCGTGACACACTTGGTTCTCATTTTATCATCACTTTTAAAGCTGATCACCATCTTGATAGGAAACATGTAGTCTTTGGCAAACTTGTGCAAGGGCATGATATattgaagaaaattgaagaTGTGGGTGACGAAGAAGGACTTCCAAGTGTaactgttaaaataattaattgtggcGAACATAATGAGGATGgaaagaagataaataaatcaaaaatgggaaGAGATGGATCTTCTGAAACCAATAGTCATGAAGTGCTGCGTAAGGGAAAGCACAAAAAATCTTCAGGAGACAGAAGGAAAAGGAGAAAGTACTACTCATCAGAATCCGATAGTTCCTCAGATTCAGACATGCAATCTTCAGAAAATGATAGTGATTCTGACTCAGATGTATCTTCATCATCTTACACAAGTTCCTCCAGTGATGACAGGcggagaaagagaaagaggtcTAGGAAAGATAAGCATAGACGTGGAAAAAGAAGAGACAAACACCGAGACAAGACACGAAGGAAACGAGACAAGAGATCAAAGCATAGatcaagaagGGAATTGGCCGGTAGAAGTCAGAGTGACAACAGCTCTGATGGTGAAAGTTGTGGTGCTCAAGCAAAAGATCAGAAGCATAAAGATCATTCTCAGAGAAATGCTGAAGGCCATTCTTCCTTAGTTGTGGACAAAGAATTACCTCCCATGCACCTTAAAAAGAGGGAGAAACTGGATATGCTAGAGGATGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGGGCCGACTATAGATCTGACAGAAGTGAAAGGAGGCAGCCTGACGTGACGGATGATCAACCAGGCAAATCTAGGAGTCAAAGCATGAGCCCTAAGCGAACCATGAGTAAGAGTATGAGTGTTAGTCCCAGGAATAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGTTTGAGCAGAAGTCCAAGTGGTAGTAGAAGCCCTCATGCTCCATTACAGAGGAGTTTGAGCAGGAGTCCAAACAGAAGAAGCATCAGCAGAAGCCCAGTGAGAGGTAGGAAGGGAAGAAGTGTCAGTAGAAGCCCTGTGAGAACTCGCAATCATAGAAGTGTCAGTAGAAGCCCTGAGAGATCTCGTGTTCGTAGAAGTGTCGGTGCAAGTCCTGTAAAATCCCAGAGCTGCCAGAGGAGTACACCCAGAGCACCATCACGAAGATCAATCAGCAGAAGCCCTGTGAGAACTTGCAATCATAGAAGTGTCAGTAGAAGCCCTGCGAGATCTCGTGGTCATAGAAGTGTCGGTGCAAGCCCTGTAAGATCCCTTTCGCAGAGCCGCCGGAGGAGTTCACTTAGGGCACCATCACAAAGATCAATTAGCAGAAGCCCTGTGAGAACTCGCAATCATAGAAGTGCCAGTAGAAGCCCTGAGAGATCTCATGGTCATAGAAGTGTCAGTGCTAGCCCTGTAAGATCCCTTTCTCGGAGCCGCCAGAATACACCCAGAACACCATCACGAAGATCAATCAGCAGAAGCCCTGTGAGAAATCACAATCATAGAAGTGTCAGTAGAAGCCCTGTGAGATCTCGTGGTCATAGAAGTGTCAGTGCAAGCCCTGTAAGATCCCTTTCTCGGAGCCACCAGAGGAGTTCACCCAGGGCACCATCACAAAGATCAATCAGCAGAAGCCCTGTGAGAACTCGCAATCATAGAAGTGTCAGTAGGAGCCCTGTGAGATCTCGTGGTCATAGAAGAGTCAGTGCAAGCCCTTTAAGATCCCTTTCTCGGAGCCGCCGGAGGAGTTCACCCAGAGCACCATCACGAAGATCAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGCACAAGCAGGAGTCCAGTTAGATCACCTGCCAGAAGCTTGAGCAGAAGCTCTGGCGGAGTCCCTTTGAGAAGCATTAGCCGAAGTCCAGTTAGAGTGCCAGGCAGAGGCAATCGCTGCAGTAATTCTAGGAGTCGTAGCCCTGTTTGTAGGGCAAGGATTCCTCGTGGTAGGAGCTTGTCTAGGAGTGTGTCACCTGATGCTTCCCCAAAACGGATCAGAAGGGGAAGAGGTTTCAGTGATCGATACTCTTATGCTAGAAGGTATAGGACTCCTTCTCGGTCTCCTATGGTGTCATACCGCTATAATGGAAGAATTGACCGTGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTAACAGGAGCCCACCGCCACGCAGAAGAACTCCGCCaagGTACCGAAGCAGGAGGAGCAGGACACCATATGTATCACGCAGCCCACGTTACCGAGGTAGGCGATATAGCCGAAGCCGTAGCCCAGTTCGCAGTCGTTCACCTGTTGATACATATCGACCTCGTGTGGAGAGGAGCAGGTCGTTATCTCGGAGCAGGAGTCCATCACGATCAAGGTCTTCAGTGGAATCACAATCTCCTCGAAAAGCGAGCAGGAACAACAGGTCAAGATCCTCGTCTGGAAGCCCAGATGGAAAGAAAGGCCTTGTATCTTATGGAGATGGTTCTCCTGACTCGAGCCAAAGGTGA 2907 0.4603 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVSPNTGKSLHYKASFFHRIVKGSIVQGGDFVNRNGTGGESIYGSKFPDESPRLKHDAPGLLSMAIADRDTLGSHFIITFKADHHLDRKHVVFGKLVQGHDILKKIEDVGDEEGLPSVTVKIINCGEHNEDGKKINKSKMGRDGSSETNSHEVLRKGKHKKSSGDRRKRRKYYSSESDSSSDSDMQSSENDSDSDSDVSSSSYTSSSSDDRRRKRKRSRKDKHRRGKRRDKHRDKTRRKRDKRSKHRSRRELAGRSQSDNSSDGESCGAQAKDQKHKDHSQRNAEGHSSLVVDKELPPMHLKKREKLDMLEDEFPKENGERRSNGTGADYRSDRSERRQPDVTDDQPGKSRSQSMSPKRTMSKSMSVSPRNKSKSPSISPKRSLSRSPSGSRSPHAPLQRSLSRSPNRRSISRSPVRGRKGRSVSRSPVRTRNHRSVSRSPERSRVRRSVGASPVKSQSCQRSTPRAPSRRSISRSPVRTCNHRSVSRSPARSRGHRSVGASPVRSLSQSRRRSSLRAPSQRSISRSPVRTRNHRSASRSPERSHGHRSVSASPVRSLSRSRQNTPRTPSRRSISRSPVRNHNHRSVSRSPVRSRGHRSVSASPVRSLSRSHQRSSPRAPSQRSISRSPVRTRNHRSVSRSPVRSRGHRRVSASPLRSLSRSRRRSSPRAPSRRSISRSPVRVSRKSTSRSPVRSPARSLSRSSGGVPLRSISRSPVRVPGRGNRCSNSRSRSPVCRARIPRGRSLSRSVSPDASPKRIRRGRGFSDRYSYARRYRTPSRSPMVSYRYNGRIDRDRYSGYRRYSPRRNRSPPPRRRTPPRYRSRRSRTPYVSRSPRYRGRRYSRSRSPVRSRSPVDTYRPRVERSRSLSRSRSPSRSRSSVESQSPRKASRNNRSRSSSGSPDGKKGLVSYGDGSPDSSQR 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0589 968 MobiDBLite consensus disorder prediction 343 392 - -
Ssu5g0589 968 Gene3D - 1 175 IPR029000 -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 719 757 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 919 951 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 460 480 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 316 331 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 640 675 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 393 459 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 597 623 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 176 968 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 259 297 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 676 698 - -
Ssu5g0589 968 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 MobiDBLite consensus disorder prediction 624 639 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 549 574 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 854 878 - -
Ssu5g0589 968 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 MobiDBLite consensus disorder prediction 225 253 - -
Ssu5g0589 968 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 467 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 903 917 - -
Ssu5g0589 968 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 801 821 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 498 535 - -
Ssu5g0589 968 MobiDBLite consensus disorder prediction 176 201 - -
Ssu5g0589 968 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Ssu5g0589 968 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0589 Ssu-Chr5 13323010 13329275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0589 26 170 U-box Gene Family AT5G67530 40.816 8.16e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0589 K09566 - gmx:100801588 479.944