Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0587 ATGGATTCTCCCAAACCTTCCAAGAACTATGGCAGTTCTTCTGCCTTCACTCGCAACGCCAACACCAACGCCAACGATTCATCGGAATCCCCTGAAGTACAAGAATCCCCCTTTTTTAGATATGTAAGCACTTTATCTCCAATAACCACCAGGACTTCTCATGTGGCACAAGGTTTTCTAGGTCTCAATTCTCCACCCCTTGTATTCAAGTCTCCACGTATTTCTCAACGTGAAACACAGCTCATGGAAAGGCCCCAACGCACTCAGTCACTCAGTGGACAAATATCTCAAAGTGAAATTGCGGGCAACAGTCTTGGTGAAGCTCCTGGAGAttccagaaaatcaaattctcaGCAGCCTCTGTCAGAGAGGTTTATAACTGACACTCAGAAGGTTTTTGACTCCAAGAATGATGCAAATACTCAAAACTACAGTTCTCCACCTTCTATTGATGAATATTTGGCAGATCCTGGGGATATTGATCAAATGTATTCCGCTGACCAGGATGTGGAACAATCTACAGATGCAGCTGAAACATCACTAAGTGGCCCAActcattcaaagaaaaatatattaaaatttgataggAAAGATGGTCCTGGTGATAAACCAGAAGAATCTTTGCCTTCGTTAGAGGATTCTAAAAAGAGTCATCAAGAAAAGCCAGCATATGGTGCAGAACCTGAAAAGATGGAAGGGGAGAAAAATGATATTGAATGGGCTTCTCAGGAGCCCACAAAGTTGGAGTCCAATCTAGCTGCAGATGTTTTTGAGAAACAATATAGTCATGATCCACTTCCCGAGCTTCAGCTTGTGGAAAATTATCAATGGGATCATAAAAATTGTACACCTCAGTGGATGCCTGATCCTCTGCAGGATGTTAAAGGATGTGAAGATTACAATGAGATGGTGTCAACCTCACATGTAACTGCAGAGAATATCTTACAAGATGGTTCTGAGGCTACTCTAAAGTACCATGGCATTCGTAGACGTTGCCTACAATTTGAGGAAGCTGCTTCCAATGCTCTTGGAAGTAACAAGTCTCGCGTGAAACTTAATGCATCttcaaacaaaatgaaaatggtcAAGCTGTCTGAACCTGTCACTTCCTTGTGTCCTCAGCAAGGTAGTGGAAACTTCCCTTTGACAGGTCCCAAGCCATCTGGTATTGGGTTGCATTTAAATAGCATCATAAATGCTATGCCAACTGGTCAGGCTGCAACTACGGGTGTGAGATTATCAGATGGTTTACAGGGGATGAAATCCGCATCTTCCATAAGGTTACAAAGAATGGAGAATGTGAAGAGATCCATACTTTCATCTAATGCTGATGGGCAATCATTGGTTGATGCTAGAAATGAGGGCCATGAAATTGATGCTTCAGTAGCTACAGATGCTGGAAATCCTGAGGACTTCAACCAACCCCCTAGCCCCTGCAAGAAAAAGAAGAAAACATCAGTCACTGCTGATGGCAATGGTGGTAAACGGTGCAACTGTAAGAGGAGTAAATGTTTAAAACTTTACTGTGAATGTTTTACTCATGGAACCTACTGTACCGACCTTTGTGCTTGCCAAGGCTGCTTAAACAGACCAGAATATGCAGAGACAGTTTCTGAGACTAAACAACAAATTGAATCCCGTAATCCACATGCATTTACTCCCAAGATTTTACAGTCTACCACTGATAATTCGTCAAACAATATGGAGGATAAAAATCTGACGACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCtgaaaaaatattgtgaatgtTATCAGGCTAATGTTGGATGCTCTAGTGGATGTCGATGTGAGGGGTGTAAGAATGTCTATGGCAAGAAAGAAGatTATGTTGCATTGGAACAACATACTTTGAGTAAAGAAAGGGTGAGCAACATTGCTGAAAAAGGATCAGACAGTACATTTCACAACAAACTGGAAATGGTGGCCAGCAAGACAAATTATGATCTACACCGCCTCTCACCTATAACGCCATCATTGCAATGCTCTGATCAAGGCAAGGAGGCTGCAAAATCCAGAGTTATTTCTGGAAACTATCTACCATCCCCTGAATCTGTTGTCAATACATTTGCATCTTGTGTAAACTACACTAAATCTTCCGAAAATTCGCACAGCAGTCATGCACTTCCGGAAGCAAATGAGATGTTGGGAACTGCCCCCTATGATTCGCAAAATAATTGTGACAATGTTAACATGATGGATCAGTTATCACCAACAAGTCAGTCAGTTGCTATCTTACTTCAGCTGACTCCTCTGTCTAATCCTGAGCCATTGTCTGGCGCTTCATCATTCTCATCTGGGGCAAATGACTGGACAAATATTTCTCAATCCCGACTCTCCCATGGATGTATTCACCAGTTACCTAGCGGCTCTCTTCGTTGGCGTAGTTCCCCACTTACCCCAAGCACTGGAGTAGGTGAAGCACAATATTTACAGTGTCCTGAATCAGATAGCAGGCTCTTTGACATTCTAGAAAATGAAACCCCTGATATACTGAAGGAAGCTTCTACTCCCATGAAGTCTGTAAAAGTAAATTCCCCAACCCAAAAACGAGTTTCTCCTCCCCAGAGTCATCATCACGGGATTGGATCAAGCTCCTCTGGAGGAGGACTGAGAAGTGGCaggaaatttatattgaaagcTGTACCTTCTTTCCCTCCATTGTCTCCTTGCGTTGATTCCAAAGGCAATGGCAACGAGGATTTGGGTAACAGTGAGAGCAAGTGA 2772 0.4152 MDSPKPSKNYGSSSAFTRNANTNANDSSESPEVQESPFFRYVSTLSPITTRTSHVAQGFLGLNSPPLVFKSPRISQRETQLMERPQRTQSLSGQISQSEIAGNSLGEAPGDSRKSNSQQPLSERFITDTQKVFDSKNDANTQNYSSPPSIDEYLADPGDIDQMYSADQDVEQSTDAAETSLSGPTHSKKNILKFDRKDGPGDKPEESLPSLEDSKKSHQEKPAYGAEPEKMEGEKNDIEWASQEPTKLESNLAADVFEKQYSHDPLPELQLVENYQWDHKNCTPQWMPDPLQDVKGCEDYNEMVSTSHVTAENILQDGSEATLKYHGIRRRCLQFEEAASNALGSNKSRVKLNASSNKMKMVKLSEPVTSLCPQQGSGNFPLTGPKPSGIGLHLNSIINAMPTGQAATTGVRLSDGLQGMKSASSIRLQRMENVKRSILSSNADGQSLVDARNEGHEIDASVATDAGNPEDFNQPPSPCKKKKKTSVTADGNGGKRCNCKRSKCLKLYCECFTHGTYCTDLCACQGCLNRPEYAETVSETKQQIESRNPHAFTPKILQSTTDNSSNNMEDKNLTTPSSARHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNVYGKKEDYVALEQHTLSKERVSNIAEKGSDSTFHNKLEMVASKTNYDLHRLSPITPSLQCSDQGKEAAKSRVISGNYLPSPESVVNTFASCVNYTKSSENSHSSHALPEANEMLGTAPYDSQNNCDNVNMMDQLSPTSQSVAILLQLTPLSNPEPLSGASSFSSGANDWTNISQSRLSHGCIHQLPSGSLRWRSSPLTPSTGVGEAQYLQCPESDSRLFDILENETPDILKEASTPMKSVKVNSPTQKRVSPPQSHHHGIGSSSSGGGLRSGRKFILKAVPSFPPLSPCVDSKGNGNEDLGNSESK 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0587 923 MobiDBLite consensus disorder prediction 1 35 - -
Ssu5g0587 923 SMART CXC_2 580 621 IPR033467 -
Ssu5g0587 923 SMART CXC_2 492 533 IPR033467 -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 849 888 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 854 886 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 461 494 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 189 234 - -
Ssu5g0587 923 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 583 617 IPR005172 -
Ssu5g0587 923 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 495 530 IPR005172 -
Ssu5g0587 923 ProSiteProfiles CRC domain profile. 493 620 IPR005172 -
Ssu5g0587 923 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 915 IPR044522 GO:0003700
Ssu5g0587 923 MobiDBLite consensus disorder prediction 166 187 - -
Ssu5g0587 923 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 915 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 69 149 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 59 234 - -
Ssu5g0587 923 MobiDBLite consensus disorder prediction 900 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0587 Ssu-Chr5 13236071 13241766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0587 844 905 CPP Transcription Factor Family AT3G22780 47.692 1.71e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ssu5g0587 TCR 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0587 K21776 - gmx:547664 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0587 5 13236071 13241766 Ssu5g0587 5 13236071 13241766 ECH
Ssu5g0587 5 13236071 13241766 Ssu1g2620 1 71514329 71517451 PCT