Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0582 ATGGGAGAAACGAAGAACGAAGTGTACGATGAGGAGCTGCTTGACTATGATGACGAAGAAGAGAAGGAACCTGACTATGCTGGAAACAAAGTCAACGGTGAAGCTGCAAAGAAGGGCTATGTTGGGATTCACAGTTCGGGGTTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGGGCTATTAAAGGTTTGTTTTATTTACCACTTGTTCCTTCGACCTCCGTTTTCTTTGGTGCATCACCAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACTTTACAGCAGATTGACCCTATTGCAGGGCAAGTTTCTACTCTTGTCTTGTGTCATACAAGGGAATTAGCATACCAGATATGCCATGAGTTTGAAAGATTCAGCATCTACTTGCCTGATCTTAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGatcttttgaaaaatgaatGCCCTAATATTGTTGTTGGTACACCTGGAAGAATACTAGGATTGGCTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCGCTGGGCATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAACAAGGAAATTCGCCCAATCTGCAAAAAATTTATGCAAGATCCTATGgaaatttatgttgatgatgaggCGAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAACAAGAAGTTGAATGACCTTCTTGATGGACTGGACTTTAATCAAATTGTTATCTTCGTGAAAAGTGTTAGTAGAGCAGTGGAGCTGGACAAACTACTTAGAGGGTGCAACTTTCCATCTATATGCATTCATTCTGGAATGTCTCAAGAAGAAAGGTTAAAGTGTTACAAAGGTTTTAAGGAGGGTCATACAAGAATTCTTGTGGCAACAGATTTGATTGGTAGAGGAATCGACATTGAACGTGTGAATATAGTTATAAACTATGACATGCCTGATTTTGCAGATACTTACTTACACAGGGTTGGTCGCGCTGGAAGATTTGGAACCAAAGGCCTGGCAATTACATTTGTTTCATGTTCGACTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAACTTGATACATCTACCTACAGTATGTTTTCCTTGTCCATTAATTTCATTTCTCATAATGATTGA 1347 0.3905 MGETKNEVYDEELLDYDDEEEKEPDYAGNKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIKGLFYLPLVPSTSVFFGASPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPIAGQVSTLVLCHTRELAYQICHEFERFSIYLPDLKVAVFYGGVNIKVHKDLLKNECPNIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLGMRKDVQDIFKMTPHDKQVMMFSATLNKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNKKLNDLLDGLDFNQIVIFVKSVSRAVELDKLLRGCNFPSICIHSGMSQEERLKCYKGFKEGHTRILVATDLIGRGIDIERVNIVINYDMPDFADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQLDTSTYSMFSLSINFISHND 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0582 448 SMART ultradead3 75 276 IPR014001 -
Ssu5g0582 448 CDD DEADc_DDX39 45 262 - -
Ssu5g0582 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 407 IPR027417 -
Ssu5g0582 448 SMART helicmild6 312 393 IPR001650 -
Ssu5g0582 448 Gene3D - 42 268 IPR027417 -
Ssu5g0582 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 432 - -
Ssu5g0582 448 CDD SF2_C_DEAD 273 402 - -
Ssu5g0582 448 Pfam Helicase conserved C-terminal domain 285 393 IPR001650 -
Ssu5g0582 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 260 IPR014001 -
Ssu5g0582 448 Gene3D - 269 437 IPR027417 -
Ssu5g0582 448 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 432 - -
Ssu5g0582 448 Pfam DEAD/DEAH box helicase 81 246 IPR011545 GO:0003676|GO:0005524
Ssu5g0582 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 433 IPR001650 -
Ssu5g0582 448 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0582 Ssu-Chr5 12892137 12898769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0582 1 434 Eukaryotic Initiation Factors Gene Family AT5G11200 75.840 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0582 K12812 - gmx:100796232 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0582 5 12892137 12898769 Ssu1g3450 1 88616730 88621620 PCT