Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0578 ATGGTACAAGCAAAGAAGTTCAGGGGAGTAAGGCAGCGCCAATGGGGCTCATGGGTGTCAGAAATTCGTCACCCATTACTGAAAAGAAGGGTATGGCTAGGTACATTTGAGACAGCTGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGCCAAAATGCCAAGACCAATTTCCCCACCCAAATGAATCAGCCTCAAGGTGCTACTACTCCCTGTGTAGACCCTTTCTCATCTCCTAATGATCTTTCTGAGCATCTGAGTAGAAAGCTGAAGAGGTGTTGCAAAGACCCTTCTCCATCCCTCACTTGTCTGAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCTGGACCACATTCAGACTCTAATTGGATCATAAGGGTGGAGCTTGGAAAGAAACATGGAGAGGGTGAGTCAAGTGTATCAGCAGGGTCGACCCCAAAAACCAGTGGTGATTTTGATGGTGATGAAGAGGACAGAATTGCCATGCAGATGATTGAAGAGCTACTTAATTGGAATTATCCCTGTGGTTCAAGTAATTAA 567 0.4656 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPTQMNQPQGATTPCVDPFSSPNDLSEHLSRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIIRVELGKKHGEGESSVSAGSTPKTSGDFDGDEEDRIAMQMIEELLNWNYPCGSSN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0578 188 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Ssu5g0578 188 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Ssu5g0578 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Ssu5g0578 188 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 MobiDBLite consensus disorder prediction 143 164 - -
Ssu5g0578 188 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ssu5g0578 188 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0578 Ssu-Chr5 12806947 12807940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0578 1 187 AP2-EREBP Transcription Factor Family AT5G25390 59.043 1.68e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g0578 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0578 - - gmx:100784305 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0578 5 12806947 12807940 Ssu5g0578 5 12806947 12807940 ECH
Ssu1g3454 1 88671779 88672899 Ssu5g0578 5 12806947 12807940 ECH
Ssu6g1025 6 16749323 16750238 Ssu5g0578 5 12806947 12807940 ECH