Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0570 ATGAATTGGATTGACAGGAATGGCATTTGGCTTTTTTCAAATAAAGGAGAATTTGGCTTTGGCTTTGTCACCACTGCAAATGACAACACATTGTTTCTACTAGCAATAGTCCACATGGAGAGCACCAAGGTGGTTTGGGTTGCAAATAGGGCACTTCCTGTCTCCAATTCTGATAAATTTGTGTTTGATGAGAAGGGCAATGTCTTTTTACAGAAAGGAGCAAGTGTGGTATGGTCTACAGGTACAAGTGGCAAGGGGGTTTCTTCAATGGAATTGAAGGACACTGGAAACTTGGTTTTGCTAGGGAATGACAGTAGAGTGATTTGGCAGAGTTTCAGCCACCCTACAGATACCTTGTTGCCAATGCAGGACTTCATTGAGGGAATGAAACTTGTCAGTGAACCTGGTCCTAACAACTTGACCTATGTTCTTGAGATTGAATCTGGCAATGTCATTCTTTCTACAGGTTTACAAACTCCACAGCTTTATTGGTCTATAAAGAAGGATAACCGcaaaaaaatcatcaacaaaaatgGTGATGTGGTGGCTTCCGCTACCCTTAATGCTAGCTCCTGGAGGTTCTATGATAAGAATAAATCCTTCTTGTGGCAATTTGATTTTGCTAAAGAATCAGCTGAAAATGCCACTTGGATTGCAGTTTTGGGAAGTGATGGCTTCATGACATTCTCCAATCTCCAAAGTGGAGGATCAATTGTTGCTTCATCAACAAGAATACCACAAGATTCTTGCAGCACCCCAGAACCTTGTGATCCCTATAACATATGCACTGGTGAACAAAAGTGCACCTGCCTTTCTGTTCTTAGCTCTAGTCCTAATTGCCAACCCGGGTTTGTCTCTCCTTGCAACTCAAAAAGCACCATTGAGCTCCTCAAAGCTGATGATGGACTCAATTACTTTGCACTTGAGTTTCTTCCACCCTTTTCAAAAACTGATTTGATTGGTTGCAAAACCTCTTGCAGTGCAAATTGCTCATGTCTTGCTATGTTCTTCCACAGCAGTTCTGGGAACTGTTTCCTGTTGGACTGGATTGGAAGCTTTGAGAAATCTGATGAAGATTCTGGTTTAGTCTCTTACATTAAGGTGGTCTCTAGTGATGGAGGCACTGGCAAAGACAGTGGAAACAGCAATAAGCAGACAATAGTTGTTGTGATCATTGTCATACTAATATTGTTTGTCATTTCTTGTATGCTCTTTGTGGCACATAGATGCTTCAGGAAAAAGGAAGATTTGCCTGAGTCTCCTCGAGAGAATTCTGAAGATGACAATTTCTTGGAGAGTTTAACTGGCATACCAAACCAGAAATCCTATTTCCCATCTTTTGCTTTTAAGATGATGGAAGAAGGGAAGGTGAGAGAGATCCTTGACTCAAAGCTGGAAGCATATGAAAATGATGAGAGGGTTCACGCTGCTGTCAAAGTTGCATTGTGGTGCATACAGGACGACATGTCTCTTAGGCCTTCCATGACCAAAGTTGTCCAGATGCTAGAGGCTCTACGCACTGTTCCTAAGCCACCAACTTGTTCTGTCTTTGTTTCTCGGTTTTACCCAAATTTACCTAAACCCATGAGTGAGACTGGAACTTCTTCAGGACCATCAGATTGTAATAGTGATGCCAATCTCTCTGCTGTTAGGCTTTCAGGGCCAAGATAA 1671 0.4159 MNWIDRNGIWLFSNKGEFGFGFVTTANDNTLFLLAIVHMESTKVVWVANRALPVSNSDKFVFDEKGNVFLQKGASVVWSTGTSGKGVSSMELKDTGNLVLLGNDSRVIWQSFSHPTDTLLPMQDFIEGMKLVSEPGPNNLTYVLEIESGNVILSTGLQTPQLYWSIKKDNRKKIINKNGDVVASATLNASSWRFYDKNKSFLWQFDFAKESAENATWIAVLGSDGFMTFSNLQSGGSIVASSTRIPQDSCSTPEPCDPYNICTGEQKCTCLSVLSSSPNCQPGFVSPCNSKSTIELLKADDGLNYFALEFLPPFSKTDLIGCKTSCSANCSCLAMFFHSSSGNCFLLDWIGSFEKSDEDSGLVSYIKVVSSDGGTGKDSGNSNKQTIVVVIIVILILFVISCMLFVAHRCFRKKEDLPESPRENSEDDNFLESLTGIPNQKSYFPSFAFKMMEEGKVREILDSKLEAYENDERVHAAVKVALWCIQDDMSLRPSMTKVVQMLEALRTVPKPPTCSVFVSRFYPNLPKPMSETGTSSGPSDCNSDANLSAVRLSGPR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0570 556 ProSiteProfiles Bulb-type lectin domain profile. 1 113 IPR001480 -
Ssu5g0570 556 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 440 556 - -
Ssu5g0570 556 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 1 443 - -
Ssu5g0570 556 CDD B_lectin 4 115 IPR001480 -
Ssu5g0570 556 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 440 556 - -
Ssu5g0570 556 MobiDBLite consensus disorder prediction 528 556 - -
Ssu5g0570 556 Gene3D Transferase(Phosphotransferase) domain 1 429 511 - -
Ssu5g0570 556 MobiDBLite consensus disorder prediction 528 549 - -
Ssu5g0570 556 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 443 - -
Ssu5g0570 556 SUPERFAMILY alpha-D-mannose-specific plant lectins 42 166 IPR036426 -
Ssu5g0570 556 SUPERFAMILY Protein kinase-like (PK-like) 432 529 IPR011009 -
Ssu5g0570 556 Gene3D - 5 114 IPR036426 -
Ssu5g0570 556 SMART blect_4 2 115 IPR001480 -
Ssu5g0570 556 Pfam D-mannose binding lectin 44 124 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0570 Ssu-Chr5 12569869 12572196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0570 435 511 Receptor kinase-like Gene Family AT5G38280 38.272 3.29e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0570 - - gmx:100787500 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0570 5 12569869 12572196 Ssu5g0570 5 12569869 12572196 ECH
Ssu1g3461 1 88815237 88817681 Ssu5g0570 5 12569869 12572196 ECH
Ssu5g0570 5 12569869 12572196 Ssu1g3461 1 88815237 88817681 PCT