Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0569 ATGCTCTTTGTGGCACATAGATGCTTCAGGAAAAAGCAAGATTTGCCTGAGTCCCCTCAAGAGTTTTCAGAAGATGACACTTTCTTGGAGAGTTTAACTGGCATGCCAATCCGTTTCAGCTACAATGATCTAGAAACTGCAACAAATAACTTCTCTATGAAGCTTGGACAAGGGGGTTTTGGCTCAGTATATAAAGGAGTTCTACCAGATGGTACTCAACTAGCTGTGAAGAAGTTGGAAGGCATTGGCCAAGGGAAGAAAGAGTTCAGGGTTGAAGTTAGCATCATAGGGAGCATTCATCACCACCATTTGGTAAGGCTTAAAGGATTCTGTGCTGAAGGGTCTCATAGACTTCTTGCTTATGAGTACATGGCCAATGGTTCATTGGATAATTGGATATTCAATAAGCACAATGGGGAATTTGTGTTGGATTGGGAAACAAGGTATAACATAGCACTTGGAACAGCGAAAGGACTTGCTTACCTCCATGAAAATTGTGACCCAAAGATTATTCATTGTGACATCAAGCCAGAAAATGTGCTTTTAGATGATAACTTCCTGGTCAAGGTTTCTGATTTTGGTTTGGCTAAGCTCATGACACGTGAACAAAGCCATGTTTTCACAACACTTAGAGGCACTAGAGGCTATCTTGCGCCTGAGTGGATCACAAACTGTGCCATATCAGAGAAAAGTGATGTTTATAGCTATGGAATGGTGTTGCTAGAGATCATTGGGGGGAGGAAAAACTATGATCCGAGAGAAACTCCAGAGAAATCCTATTTCCCATCTTTTGCTTTTAAGATGATGGAAGAAGGGAAGGTGAGAGAGATTCTTGACTCAAAGCTGGAAACATATGAAAATGATGAGAGGGTTCACACTGCTGTCAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCTCTTAGGCCTTCCATGACCAAAGTTGTCCAAATGCTAGAGGGTCTATGCACTGTTCCTAAGCCACCAACTTGTTCTGTCCTTCGTTCTCGGTTTTACTCAACTTTACACCAACCCATGAGTGAGGCTGGAACTTCTTCAGGACCATCAGATTGTAACAGTGATGCCAATCTCTCTGCTGTTAGGCTTTCAGGGCCAAGATAA 1122 0.4242 MLFVAHRCFRKKQDLPESPQEFSEDDTFLESLTGMPIRFSYNDLETATNNFSMKLGQGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRVEVSIIGSIHHHHLVRLKGFCAEGSHRLLAYEYMANGSLDNWIFNKHNGEFVLDWETRYNIALGTAKGLAYLHENCDPKIIHCDIKPENVLLDDNFLVKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNCAISEKSDVYSYGMVLLEIIGGRKNYDPRETPEKSYFPSFAFKMMEEGKVREILDSKLETYENDERVHTAVKVALWCIQEDMSLRPSMTKVVQMLEGLCTVPKPPTCSVLRSRFYSTLHQPMSEAGTSSGPSDCNSDANLSAVRLSGPR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0569 373 Gene3D Phosphorylase Kinase; domain 1 17 123 - -
Ssu5g0569 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Ssu5g0569 373 MobiDBLite consensus disorder prediction 345 373 - -
Ssu5g0569 373 SMART serkin_6 49 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0569 373 SUPERFAMILY Protein kinase-like (PK-like) 31 320 IPR011009 -
Ssu5g0569 373 Gene3D Transferase(Phosphotransferase) domain 1 124 325 - -
Ssu5g0569 373 MobiDBLite consensus disorder prediction 345 366 - -
Ssu5g0569 373 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 1 373 - -
Ssu5g0569 373 CDD STKc_IRAK 55 322 - -
Ssu5g0569 373 Pfam Protein kinase domain 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0569 373 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Ssu5g0569 373 ProSiteProfiles Protein kinase domain profile. 49 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0569 373 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0569 Ssu-Chr5 12562017 12563138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0569 20 329 Receptor kinase-like Gene Family AT5G20050 49.231 2.69e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu5g0569 Pkinase 4.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0569 - - gmx:100787500 683.33