Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0562 ATGTCTAAAGAAGTTATTGCTACTCCATCAGTTGCTCCTTTTGAGTATGAGATCTTGGATAGTGATGCTAACGTCCTCAGAACCATTAGAGCCTCATCCAATCGCACAAATCCATGGATTGAACCTGAAAGGTTGAAACTTAGGCACAGAATTGGTCGGGGGCCTTTTGGTGATGTTTGGCTAGCAACTCATCATCTGTCAACTGAAGATTATGATGAGTACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATATAAAGATGATATTAGAGAAGTtcaatgaattatattttaagtgcCAAGGAGTTGCAAATGTTCCCTGGCTACATGGAATTTCAATCTTAAATGGAAGGATATGCATCATTATGAATTTGTATGAGGGTTCAATTGGTGACAGGATGGCTAGGCTCAAAGAAGGAAGGATTTCCTTACATGATGTTTTAAGGTATGGAATCAATCTGGTTCAAGGTGTTCTGAAACTTCACTCTAAAGGGATCCTCATTCTCAACCTTAAACCATTTAATGTTCTTCTCAATGATAGTGATCAAGTAATTTTGGGAGATGTTGGTATTCCCAGTCTTTTGCTTGGCTCCTCATTCCTAAGCTCTGATATAGCTGAGAGGCTTGGAACTCCAAATTACATGGCTCCAGAGCAATGGGAGCCAGAGGTCAGAGGTCCTATATCCTTTGAAACAGATTCTTGGGGATTCGGTTGCACCATTGTTGAAATGTTGACTGGTAATCAACCTTGGTATGGATGTCCTGTTGGCAAAATATACCAGTCAGTTGTTGAAAAGCATGAAAAACCCAATATTCCATGTGGCCTTCCTTCTTCAATTGAGAATATCCTCAATGGATGCTTTGAGTATGATTTGAGGAATCGCCCTTTAATGGTAGATATTCTGAGTGTCTTTCAAagTGCTCTGAATGAACTGGCCGATGATGGAGGATGGAGATACCTAGGAAATGTCAAAGGTGTTGCGAAATCAGGTAGCACTGACTACACAGAGTGGTTCCTCTCAAAGGATCATCTTCAGGTGGGTGACGTAGTCCGATCTAGAAAGCCTTTCAATGCATGTACATCTCAAAACATGAACGTCCCAGAAGCAACTATTGTTGGTTTAGAGCATAGTGCAGATCACGGGTTCCCTCTCGTGAGGATCCATGGTATTCATGACCCTGTTAGAATTCATGTATCAAATCTTGAACGTGTCtcatttggcttggcagctGGTGATTGGGTACGCATAAGGGATGGAGATGAGAAGCACTCCCCAGTGGGCATTCTGCATGCCATCACCCGCGACGGTAGAGTGGCTGTTGGATTTCTCGGGCTGCAAACTCTCTGGAATGGAAATTCTTCGGAAATCGAAATGGCAGAATCATACTGCATTGGCCAGTTTGTCAGGCTCAGAGACAACGTTTCAAGCCCTCGATTTGAATGGCGTCGCAAAAGGGGAGGGGCCTATGCTGCTGGTAGGATTTCATGGATTCTACCAAATGGGTGTTTGGTTGTCAAGTTCCCAGGGATGCTGCCTTTTGGCAATGGACCAAGCACCTACTTGGCTGATCCCTCTGAGGTTGAAGTGGTAGAGTTTAGGACTTGTCCTGGGATGATTGAGAAGTATCAGCATGTTGAGGATCATCACTGGGCAATTAGACCTCTTCTAATTGCAATTGGTCTATTTACTGCTCTCAAACTAGGCATATCAGTTGGAAAGAAAGTGAGGAGGAACAGGAAGGTCAATGCAATTGATAGTCAAAGTCAATATCTTGATGGTAAAAATGCCAGCTCTGCTACAACTACAAGATCTTCCAGTGCTATAAATCCAGGCAACAAAACATGGGTTCCTACAGTTGCTAATATGCTTTTTAAGGAAGGTGGTAACACGTCCAGTGGTCGCTAG 1920 0.4219 MSKEVIATPSVAPFEYEILDSDANVLRTIRASSNRTNPWIEPERLKLRHRIGRGPFGDVWLATHHLSTEDYDEYHEVAAKMLHPIKEDHIKMILEKFNELYFKCQGVANVPWLHGISILNGRICIIMNLYEGSIGDRMARLKEGRISLHDVLRYGINLVQGVLKLHSKGILILNLKPFNVLLNDSDQVILGDVGIPSLLLGSSFLSSDIAERLGTPNYMAPEQWEPEVRGPISFETDSWGFGCTIVEMLTGNQPWYGCPVGKIYQSVVEKHEKPNIPCGLPSSIENILNGCFEYDLRNRPLMVDILSVFQSALNELADDGGWRYLGNVKGVAKSGSTDYTEWFLSKDHLQVGDVVRSRKPFNACTSQNMNVPEATIVGLEHSADHGFPLVRIHGIHDPVRIHVSNLERVSFGLAAGDWVRIRDGDEKHSPVGILHAITRDGRVAVGFLGLQTLWNGNSSEIEMAESYCIGQFVRLRDNVSSPRFEWRRKRGGAYAAGRISWILPNGCLVVKFPGMLPFGNGPSTYLADPSEVEVVEFRTCPGMIEKYQHVEDHHWAIRPLLIAIGLFTALKLGISVGKKVRRNRKVNAIDSQSQYLDGKNASSATTTRSSSAINPGNKTWVPTVANMLFKEGGNTSSGR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0562 639 ProSiteProfiles Protein kinase domain profile. 45 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g0562 639 PANTHER OS06G0639500 PROTEIN 1 635 - -
Ssu5g0562 639 MobiDBLite consensus disorder prediction 597 618 - -
Ssu5g0562 639 Pfam Protein tyrosine and serine/threonine kinase 45 307 IPR001245 GO:0004672|GO:0006468
Ssu5g0562 639 Gene3D Phosphorylase Kinase; domain 1 21 129 - -
Ssu5g0562 639 PANTHER OS06G0639500 PROTEIN 1 635 - -
Ssu5g0562 639 Gene3D Transferase(Phosphotransferase) domain 1 131 320 - -
Ssu5g0562 639 SUPERFAMILY Protein kinase-like (PK-like) 42 309 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0562 Ssu-Chr5 12415811 12419641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0562 10 316 MAP Kinase Kinase Kinase AT2G17700 25.240 5.94e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Ssu5g0562 PK_Tyr_Ser-Thr 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0562 - - gsj:114393396 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0562 5 12415811 12419641 Ssu5g0562 5 12415811 12419641 ECH
Ssu1g3470 1 88934429 88937162 Ssu5g0562 5 12415811 12419641 ECH
Ssu5g0562 5 12415811 12419641 Ssu1g3470 1 88934429 88937162 PCT