Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0560 ATGTTTGTCCTAGAAAATGGTGCGAAGGGGGAAGACCCAAGGCTTCAAGCCATCTCCGAAGCCATCAGAGTGGTGCCTCACTTCCCCAAACaagGAATAATGTTTCAAGACATAACAACATTGTTGTTGGATCACAAGGCGTTTAAAGACACGGTTGACATTTTCGCTGATCGTTACAGGGACATGGATATTTCTGTTGTTGCCGGAGTTGAAGCCAGGGGATTCATTTTTGGTTCCTCAATTGCGTTAGGCATTGGTGCCAAGTTTGTTCCTTTATGCAAACCTGGAAAGCTGCCAGGTGAAGTAATTTCAGAAAAATATGTTCTAGAATATGGAACTGATTGTTTGGAGATGCATGTTGGTGCTGTCCAGCCCAGTGAACGGGTCataattattgatgatttgGTGGCTACAGGTGGAACTCTGTCAGCAGCAATTAGACTTCTAGAATGTGCTGGTGCTGAAGTAGTGGAGTGTGCTTGTGTGATTGGTCTGTCTGATCTTAAGGTACGCTGCAAGCTTGATGGAAAGCCACTTTATATCCTTTTGGAGCCACGTCAAGTAGAAAATGGTTTTTGA 579 0.4318 MFVLENGAKGEDPRLQAISEAIRVVPHFPKQGIMFQDITTLLLDHKAFKDTVDIFADRYRDMDISVVAGVEARGFIFGSSIALGIGAKFVPLCKPGKLPGEVISEKYVLEYGTDCLEMHVGAVQPSERVIIIDDLVATGGTLSAAIRLLECAGAEVVECACVIGLSDLKVRCKLDGKPLYILLEPRQVENGF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0560 192 CDD PRTases_typeI 52 184 IPR000836 -
Ssu5g0560 192 Pfam Phosphoribosyl transferase domain 42 163 IPR000836 -
Ssu5g0560 192 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 189 - -
Ssu5g0560 192 Gene3D - 6 185 IPR029057 -
Ssu5g0560 192 SUPERFAMILY PRTase-like 21 176 IPR029057 -
Ssu5g0560 192 TIGRFAM apt: adenine phosphoribosyltransferase 19 184 IPR005764 GO:0003999|GO:0005737|GO:0006168
Ssu5g0560 192 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 5 189 - -
Ssu5g0560 192 Hamap Adenine phosphoribosyltransferase [apt]. 18 185 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0560 Ssu-Chr5 12371345 12374822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0560 11 184 PRT Gene Family AT1G27450 68.966 4.87e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0560 K00759 - gmx:100775389 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0560 5 12371345 12374822 Ssu5g0560 5 12371345 12374822 ECH
Ssu1g3471 1 88964135 88966864 Ssu5g0560 5 12371345 12374822 ECH
Ssu5g0560 5 12371345 12374822 Ssu1g3471 1 88964135 88966864 PCT