Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0550 ATGGGGAAGCCGACGGGGAAAAAGAAAgatcatcatcaccaccacgagACTCCTCCGAAGGCAAACGGCCACAGCGCCAAATCATGGGAAGACAAACGCGCGTCGTCGTCGTCGAAGGCTCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAGCTTCGCGAGGAGGGGAACAAGCTCTTTCAGAGGAAGGACCACGAGGGCGCGATGTTGAAGTACGAGAAGGCCCTCAGGCTGCTGCCGAAGAACCACATCGACGTGGCGCACCTGCGCACAAGCACGGCGGCGTGCTACATGCAGCTGGGGCTGGGCGAGTACCCGCGCGCCATCGGCGAGTGCAACCTGGCGCTGCAGGTGTCGCCGCGGTACAGCAAGGCGCTGCTGAGGCGCGCGAGGTGCTACGAGGCGCTGAGCCGCGTGGATTTGGCGATGCGGGACGTGCGCGTGGTGCTGAACTGGGAGCCCAACAACTCGACCGCCCTGGAGGTTTTGGACAGTCTGAGGAAGACGATGGACGAGAAAGGGATTGTGGTCGACGAGACCGAGATCGCCCTGGCCACGCTGCAGCCGGAGCCGCCCTCGGCGCGGCTCCGGAAGGTGGTCAGGGAGaagatcaagaaaaagaaagaactcGCGGGAGAGgatgaagaaagaaaatcaaagaaagtGATAattgaggaggaggaggaggtgaaGGTTGAGAGTGTCAAAAAAAAGGTCAATAAGGTCAAGGAGAAGGGGTTGGttaaggaagagaaagagaaatcgGGGGGTGTTACTAGGACTGTGAAGTTGATATACGGAGAGGATATAAGGTGGGCTCAATTGCCTGTGAATTGTGGGATGAGGCTGGTGAGGGATGTGATAAGGGATCGGTTTCCGGGGTTGAAGGGTGTGCTTGTGAAGTATAGGGATAGGGAGGGTGATTTGGTTACTATCACTAGTACTGCTGAATTGAGGTTGGCTGAGACTTGTCACGTGCTTGGCTCGATTAGGCTTTATGTTACGCCGGTTGAGCCGGATCAGGAGCCGTGTTATGATGATGGTGTGGTTGGGAGGCCGGTTGAGAATGGGGGTGGAGGCAGGGGTGTGGGGGGGAACATGAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCCAGGCTGTTTAAGAACCATGTTGGGTTTGATTCGGATGCGTATCTGGATATCCATGAGGTTGGGATGAAGCTGTATTCGGAGGCCATGGAGGATGCGGTGACGAGTGAGGGTGCTCAGGTGCTGTTTGAGCTTGCCGCGGATAGGTTTCAGGAGATGGCGGCTTTGGCTTTGTTCAACTGGGGGAGTGTGCATATGTCCAGGGCGAGGAAGAGGGTGTGTTTTCCGGAGGATGCCTCAAGGGAGTCTTCGTTTGAGCGTGTTAAGGCCGCGTATGAGTGGGCTCAGAAGGAGTACATGGATGCAGAGAAGAGGTTTGAGGAAGCCGTGAAGATCAAACCGGATTTTTATGAGGGGATTCTTGCTCTTGGGCATCAGCAGTTCGAGCAAGCAAGGCTCTGCTGGTGTTATTTGGTTGCGAACGAGAAGGATTTGGAAGCTGGACCTTCGGATGAGGTTCTGCAGCTGTATAACAAGGCGGAGGACAGCATGGAGAAAGGCATGCTGATGTGGGAGGAGATTGAGGAGCGGCGTTTGAATGGACTGTCCAGATCAGAGAAATATAAAGAGCAGTTAGAGAATAGGGGGTTGCACGGCCTTTTCAGGGATGTTTCTGCTGATGAAGCTGAAGAGCAGGCTGCAAGGATGAGGTTgcaaatatatcttttatggGGCACCTTGTTGTATGAACGTTCTGTTGTGGAGTTCAAGCTTGGCCTGCCAACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAATTTGAACTGGCTGGAGCTTCTCCAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGACGAGTTAGTGCAAGCGTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAAACTCCATTATATCCTGGAGCAATTTTGA 2115 0.5054 MGKPTGKKKDHHHHHETPPKANGHSAKSWEDKRASSSSKALDEDTAMFINMSQELREEGNKLFQRKDHEGAMLKYEKALRLLPKNHIDVAHLRTSTAACYMQLGLGEYPRAIGECNLALQVSPRYSKALLRRARCYEALSRVDLAMRDVRVVLNWEPNNSTALEVLDSLRKTMDEKGIVVDETEIALATLQPEPPSARLRKVVREKIKKKKELAGEDEERKSKKVIIEEEEEVKVESVKKKVNKVKEKGLVKEEKEKSGGVTRTVKLIYGEDIRWAQLPVNCGMRLVRDVIRDRFPGLKGVLVKYRDREGDLVTITSTAELRLAETCHVLGSIRLYVTPVEPDQEPCYDDGVVGRPVENGGGGRGVGGNMSTVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDAVTSEGAQVLFELAADRFQEMAALALFNWGSVHMSRARKRVCFPEDASRESSFERVKAAYEWAQKEYMDAEKRFEEAVKIKPDFYEGILALGHQQFEQARLCWCYLVANEKDLEAGPSDEVLQLYNKAEDSMEKGMLMWEEIEERRLNGLSRSEKYKEQLENRGLHGLFRDVSADEAEEQAARMRLQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASPTDIGVMIKNHCSNETAMEGFKIDELVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0550 704 Gene3D Tetratricopeptide repeat domain 49 177 IPR011990 GO:0005515
Ssu5g0550 704 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g0550 704 PANTHER PROTEIN PHOX4 1 703 - -
Ssu5g0550 704 MobiDBLite consensus disorder prediction 1 43 - -
Ssu5g0550 704 PANTHER PROTEIN CLMP1 1 703 IPR044517 -
Ssu5g0550 704 CDD PB1 264 337 - -
Ssu5g0550 704 SUPERFAMILY CAD & PB1 domains 262 348 - -
Ssu5g0550 704 SUPERFAMILY TPR-like 52 511 IPR011990 GO:0005515
Ssu5g0550 704 Coils Coil 465 485 - -
Ssu5g0550 704 SMART tpr_5 463 496 IPR019734 GO:0005515
Ssu5g0550 704 SMART tpr_5 52 85 IPR019734 GO:0005515
Ssu5g0550 704 SMART tpr_5 90 125 IPR019734 GO:0005515
Ssu5g0550 704 SMART tpr_5 126 159 IPR019734 GO:0005515
Ssu5g0550 704 Pfam PB1 domain 262 339 IPR000270 GO:0005515
Ssu5g0550 704 Coils Coil 228 248 - -
Ssu5g0550 704 ProSiteProfiles TPR repeat profile. 52 85 IPR019734 GO:0005515
Ssu5g0550 704 Gene3D - 252 339 - -
Ssu5g0550 704 MobiDBLite consensus disorder prediction 16 39 - -
Ssu5g0550 704 ProSiteProfiles PB1 domain profile. 262 340 IPR000270 GO:0005515
Ssu5g0550 704 SMART PB1_new 262 340 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0550 Ssu-Chr5 12094014 12096229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0550 42 159 Calmodulin-binding Proteins AT3G25230 30.709 4.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0550 - - vra:106765155 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0550 5 12094014 12096229 Ssu1g3482 1 89154354 89155959 PCT