Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0540 ATGCTTTTCATTTTGGGTGGGTCCAACATCAAGGCTTGTGTGCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCGATAATGAGTCACACAATTGTGAAAAGCCTCCTGAAAGTGTGGAATGGTGAGAAAGATGGCATGCATAAGCACACAACTTCATGTGAAGTTTTTGAAAAGGAAATAGATGCATTTCCATCCTCAAAATCTGGACTAGAAGTTGATGAAGAAAGTGTTTTGAAGCCCAAAATTGTTGATACATCAACTGATCTGGTGAAAGTTCAAATATCTACAAATCTCTTACAGCACAACCTGACCTCTGTTTCTAATTTCAAGGTACATAACAGCATTACAGCAGGAGTTCTTGATCCAGCTGTTAAACAATGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCCAATGTTGACACGATGAGTGCTTTTGATGTATCCGGTGTTTCGCGTCCAAGAGCAGATGTGGTTTGTTCCATTTGCAATCGACGGGGCGGTTCTTGTATAAAATGCAGGATTGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTATTGCAAAGTGAGAATGAAGGTATTGATGATGAGAAGATTGGATTTTATGGAATATGCATGCTTCATACTATTGATCCTAGATGTCTGTCCATATATGATCCTACTGATGAAATGGGCAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCCGTAGATGGGATGGTTTTCAGAATAATCACTGCCAAGGTGGCCTTGTTCCTGAGGAGCAGCTAAATGCTTGGATTCACATTAATGGGCAGAAATTATGCTCCCTGGGACTCCCAAAATTCCCAGATTTAGATATTGAACATGATAGTCGAAAGGAATATGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGTATACATGCCCTTGGTCTTTACACTTCTCGATTCATTTCCAGGGGTGAAATGGTTGTTGAATATATTGGTGAAATTGTGGGGCTGCGTGTGGCTGATAAAAGGGAAAAGGAATATCAATCTGGAAGGAAACTTCAGTACAAAAGTGCCTGCTATTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAGAAGAAGGTTGTCTTCTTTGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACATATGATTACCACTTTAACCACGAAGACGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 1383 0.4165 MLFILGGSNIKACVLCGYGGGAMTRAIMSHTIVKSLLKVWNGEKDGMHKHTTSCEVFEKEIDAFPSSKSGLEVDEESVLKPKIVDTSTDLVKVQISTNLLQHNLTSVSNFKVHNSITAGVLDPAVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRRGGSCIKCRIADCSVKFHPWCAHQKNLLQSENEGIDDEKIGFYGICMLHTIDPRCLSIYDPTDEMGSQEEKEFTCARAEGYKGRRWDGFQNNHCQGGLVPEEQLNAWIHINGQKLCSLGLPKFPDLDIEHDSRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEMVVEYIGEIVGLRVADKREKEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0540 460 CDD ePHD 127 219 - -
Ssu5g0540 460 ProSiteProfiles SET domain profile. 316 437 IPR001214 GO:0005515
Ssu5g0540 460 SMART set_7 316 443 IPR001214 GO:0005515
Ssu5g0540 460 Pfam SET domain 329 436 IPR001214 GO:0005515
Ssu5g0540 460 ProSiteProfiles Post-SET domain profile. 444 460 IPR003616 -
Ssu5g0540 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 221 IPR013083 -
Ssu5g0540 460 SUPERFAMILY SET domain 308 456 IPR046341 -
Ssu5g0540 460 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 12 460 - -
Ssu5g0540 460 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 12 460 - -
Ssu5g0540 460 Gene3D SET domain 236 460 IPR046341 -
Ssu5g0540 460 Pfam PHD-zinc-finger like domain 126 201 - -
Ssu5g0540 460 SMART PostSET_3 444 460 IPR003616 -
Ssu5g0540 460 ProSiteProfiles Extended PHD (ePHD) domain profile. 106 220 IPR034732 -
Ssu5g0540 460 CDD SET_SETD1-like 318 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0540 Ssu-Chr5 11912813 11919281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0540 318 460 C2H2 Transcription Factor Family AT2G23740 33.742 4.03e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu5g0540 SET 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0540 - - ccaj:109815338 864.759